FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010412 through 18771 annotations produced 1 hits

Ribosomal protein S19a (RpS19a):

Annotation Number : CG4464
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010412
Gbrowse : chrX:16531911-16532964 (+) // 100.0 //
Probeset : 1637448_s_at
Accessions : protein= NP_523376; /// NP_727992; /// NP_727993;, nucleotide= NM_078652; /// NM_167526; /// NM_167527;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from ele
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0010412.
Homophila reports that CG4464 is a close match (3e-46) to human gene DBA;RPS19 (NP_001013), a gene associated with Anemia, Diamond-Blackfan, 105650 (3).
TRiP has 1 RNAi stocks for FBgn0010412 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010412 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2791 ± 45	4 of 4	0.70	Down
Head	4261 ± 146	4 of 4	1.10	None
Eye	5578 ± 95	4 of 4	1.50	Up
Thoracicoabdominal ganglion	3534 ± 53	4 of 4	0.90	None
Salivary gland	11727 ± 451	4 of 4	3.15	Up
Crop	5697 ± 342	4 of 4	1.50	Up
Midgut	4931 ± 83	4 of 4	1.30	Up
Tubule	4158 ± 119	4 of 4	1.10	Up
Hindgut	4575 ± 123	4 of 4	1.20	Up
Heart	6132 ± 401	4 of 4	1.65	Up
Fat body	5142 ± 575	4 of 4	1.38	Up
Ovary	3164 ± 54	4 of 4	0.80	None
Testis	1108 ± 20	4 of 4	0.30	Down
Male accessory glands	8085 ± 175	4 of 4	2.20	Up
Virgin spermatheca	3733 ± 352	4 of 4	1.00	None
Mated spermatheca	4207 ± 215	4 of 4	1.13	None
Adult carcass	5292 ± 202	4 of 4	1.40	Up
Larval CNS	2548 ± 139	4 of 4	0.68	Down
Larval Salivary gland	7195 ± 351	4 of 4	1.93	Up
Larval midgut	4225 ± 59	4 of 4	1.13	None
Larval tubule	4854 ± 105	4 of 4	1.30	Up
Larval hindgut	3920 ± 19	4 of 4	1.05	None
Larval fat body	7964 ± 845	4 of 4	2.10	Up
Larval trachea	5508 ± 200	4 of 4	1.48	Up
Larval carcass	4429 ± 304	4 of 4	1.19	None
S2 cells (growing)	4241 ± 82	4 of 4	1.14	None
Whole fly	3726 ± 202	4 of 4

Looking for FBgn0010412. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720