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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010417 through 18771 annotations produced 1 hits



chr3L:19592186-19594486 (+) // 100.0 // (Suppressor of Ras85D 3-4B):

Annotation Number : CG32211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626563_at
Accessions : protein= , nucleotide= NP_524161;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG32211 interacts with CG2845 CG9375 CG9375 CG9375 CG18085 CG15793 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 64 of 4 1.20Up
Head107 84 of 4 0.70Down
Eye91 14 of 4 0.61Down
Thoracicoabdominal ganglion158 114 of 4 1.10None
Salivary gland127 84 of 4 0.85None
Crop116 64 of 4 0.80Down
Midgut57 14 of 4 0.40Down
Tubule103 24 of 4 0.70Down
Hindgut101 74 of 4 0.70Down
Heart91 44 of 4 0.61Down
Fat body134 84 of 4 0.90None
Ovary220 54 of 4 1.50Up
Testis61 14 of 4 0.40Down
Male accessory glands166 54 of 4 1.10None
Virgin spermatheca137 64 of 4 0.92None
Mated spermatheca113 74 of 4 0.76Down
Adult carcass102 14 of 4 0.70Down
Larval CNS239 44 of 4 1.60Up
Larval Salivary gland154 64 of 4 1.03None
Larval midgut63 114 of 4 0.43Down
Larval tubule160 94 of 4 1.10None
Larval hindgut128 24 of 4 0.86Down
Larval fat body100 154 of 4 0.70Down
Larval trachea134 174 of 4 0.90None
Larval carcass111 54 of 4 0.74Down
S2 cells (growing)216 44 of 4 1.45Up
Whole fly149 64 of 4

Looking for FBgn0010417. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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