FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010423 through 18771 annotations produced 1 hits

troponin C (TpnC47D):

Annotation Number : CG9073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010423
Gbrowse : chr2R:7161537-7162796 (-) // 100.0 //
Probeset : 1631639_at
Accessions : protein= NP_476968;, nucleotide= NM_057620;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceabl
FlyMine data for FBgn0010423.
Homophila reports that CG9073 is a close match (2e-13) to human gene CMD1Z;TNNC1 (NP_003271), a gene associated with Cardiomyopathy, dilated, 1Z, 611879 (3);Cardiomyopathy, familial hypertrophic, 192600 (3) (?).
TRiP has 1 RNAi stocks for FBgn0010423 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	9 ± 1	0 of 4	0.10	Down
Eye	3 ± 2	1 of 4	0.02	Down
Thoracicoabdominal ganglion	8 ± 1	0 of 4	0.00	Down
Salivary gland	3 ± 0	0 of 4	0.02	Down
Crop	4473 ± 273	4 of 4	25.80	Up
Midgut	338 ± 25	4 of 4	1.90	Up
Tubule	17 ± 0	0 of 4	0.10	Down
Hindgut	1023 ± 16	4 of 4	5.90	Up
Heart	2158 ± 205	4 of 4	12.43	Up
Fat body	83 ± 41	4 of 4	0.48	Down
Ovary	16 ± 1	4 of 4	0.10	Down
Testis	80 ± 8	4 of 4	0.50	Down
Male accessory glands	176 ± 13	4 of 4	1.00	None
Virgin spermatheca	9 ± 3	0 of 4	0.05	Down
Mated spermatheca	10 ± 3	0 of 4	0.06	Down
Adult carcass	409 ± 20	4 of 4	2.40	Up
Larval CNS	30 ± 7	4 of 4	0.17	Down
Larval Salivary gland	6 ± 1	0 of 4	0.04	Down
Larval midgut	393 ± 3	4 of 4	2.27	Up
Larval tubule	13 ± 2	0 of 4	0.10	Down
Larval hindgut	794 ± 21	4 of 4	4.58	Up
Larval fat body	8 ± 3	0 of 4	0.00	Down
Larval trachea	134 ± 98	4 of 4	0.78	None
Larval carcass	4261 ± 296	4 of 4	24.54	Up
S2 cells (growing)	2 ± 1	0 of 4	0.01	Down
Whole fly	173 ± 11	4 of 4

Looking for FBgn0010423. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720