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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010435 through 18771 annotations produced 1 hits



epithelial membrane protein (emp):

Annotation Number : CG2727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010435
Gbrowse : chr2R:20864126-20872321 (-) // 100.0 //
Probeset : 1636991_s_at
Accessions : protein= NP_523859; /// NP_726504; /// NP_726505;, nucleotide= NM_079135; /// NM_166702; /// NM_166703;
Pathway : 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferr
FlyMine data for FBgn0010435.
BDGP gene expression has embryonic in situ data for emp: 19 pix of staining in 10 body parts.
Homophila reports that CG2727 is a close match (4e-54) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
TRiP has 1 RNAi stocks for FBgn0010435 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 24 of 4 0.10Down
Head1342 ± 1574 of 4 2.30Up
Eye588 ± 254 of 4 1.03None
Thoracicoabdominal ganglion40 ± 64 of 4 0.10Down
Salivary gland202 ± 174 of 4 0.35Down
Crop4835 ± 1924 of 4 8.50Up
Midgut229 ± 94 of 4 0.40Down
Tubule188 ± 234 of 4 0.30Down
Hindgut2254 ± 734 of 4 3.90Up
Heart166 ± 104 of 4 0.29Down
Fat body200 ± 374 of 4 0.35Down
Ovary96 ± 84 of 4 0.20Down
Testis1415 ± 524 of 4 2.50Up
Male accessory glands96 ± 54 of 4 0.20Down
Virgin spermatheca115 ± 64 of 4 0.20Down
Mated spermatheca131 ± 134 of 4 0.23Down
Adult carcass1536 ± 994 of 4 2.70Up
Larval CNS68 ± 104 of 4 0.12Down
Larval Salivary gland173 ± 94 of 4 0.30Down
Larval midgut247 ± 194 of 4 0.43Down
Larval tubule234 ± 124 of 4 0.40Down
Larval hindgut532 ± 164 of 4 0.93None
Larval fat body285 ± 524 of 4 0.50Down
Larval trachea2386 ± 1584 of 4 4.17Up
Larval carcass585 ± 254 of 4 1.02None
S2 cells (growing)8 ± 20 of 4 0.01Down
Whole fly572 ± 354 of 4

Looking for FBgn0010435. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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