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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010452 through 18771 annotations produced 1 hits



Tartan (trn):

Annotation Number : CG11280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010452
Gbrowse : chr3L:13107372-13111188 (+) // 100.0 //
Probeset : 1639235_at
Accessions : protein= NP_524055;, nucleotide= NM_079331;
Pathway : open tracheal system // inferred from mutant phenotype"
Interpro : 0005886 // plasma membrane // non-traceable author statement
FlyMine data for FBgn0010452.
BDGP gene expression has embryonic in situ data for trn: 109 pix of staining in 35 body parts.
Homophila reports that CG11280 is a close match (5e-14) to human gene CSCD;DCN (NP_598010), a gene associated with Corneal dystrophy, congenital stromal, 610048 (3).
BioGrid reports that CG11280 interacts with CG13214 CG14228 CG5471 CG8368 CG9099 CG6500 .
TRiP has 1 RNAi stocks for FBgn0010452 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010452 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 ± 54 of 4 4.60Up
Head78 ± 44 of 4 1.70Up
Eye86 ± 34 of 4 1.90Up
Thoracicoabdominal ganglion107 ± 24 of 4 2.40Up
Salivary gland37 ± 44 of 4 0.82None
Crop80 ± 24 of 4 1.80Up
Midgut45 ± 44 of 4 1.00None
Tubule14 ± 13 of 4 0.30Down
Hindgut90 ± 24 of 4 2.00Up
Heart7 ± 04 of 4 0.17Down
Fat body12 ± 04 of 4 0.27Down
Ovary22 ± 24 of 4 0.50Down
Testis44 ± 24 of 4 1.00None
Male accessory glands12 ± 32 of 4 0.30Down
Virgin spermatheca18 ± 34 of 4 0.40Down
Mated spermatheca20 ± 24 of 4 0.45Down
Adult carcass21 ± 14 of 4 0.50Down
Larval CNS656 ± 594 of 414.48Up
Larval Salivary gland20 ± 04 of 4 0.45Down
Larval midgut22 ± 34 of 4 0.50Down
Larval tubule19 ± 14 of 4 0.40Down
Larval hindgut61 ± 34 of 4 1.36Up
Larval fat body6 ± 11 of 4 0.10Down
Larval trachea60 ± 54 of 4 1.34Up
Larval carcass62 ± 64 of 4 1.37None
S2 cells (growing)4 ± 12 of 4 0.11Down
Whole fly45 ± 34 of 4

Looking for FBgn0010452. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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