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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0010470 through 18771 annotations produced 1 hits

Fkbp13 (Fkbp13):

Annotation Number : CG9847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010470
Gbrowse : chr2R:17374677-17385431 (-) // 100.0 //
Probeset : 1633836_a_at
Accessions : protein= NP_476973; /// NP_726074;, nucleotide= NM_057625; /// NM_166452;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0010470.
BDGP gene expression has embryonic in situ data for Fkbp13: 21 pix of staining in 10 body parts.
Homophila reports that CG9847 is a close match (3e-17) to human gene FKBP5;FKBP51 (NP_004108), a gene associated with {Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3).

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 24 of 4 0.30Down
Head758 184 of 4 1.10None
Eye586 514 of 4 0.88None
Thoracicoabdominal ganglion230 54 of 4 0.30Down
Salivary gland4516 934 of 4 6.78Up
Crop1295 694 of 4 1.90Up
Midgut1268 274 of 4 1.90Up
Tubule501 224 of 4 0.80Down
Hindgut547 204 of 4 0.80None
Heart2071 474 of 4 3.11Up
Fat body2030 1104 of 4 3.05Up
Ovary412 204 of 4 0.60Down
Testis63 64 of 4 0.10Down
Male accessory glands4435 2584 of 4 6.70Up
Virgin spermatheca5236 1084 of 4 7.86Up
Mated spermatheca5227 1894 of 4 7.85Up
Adult carcass1173 364 of 4 1.80Up
Larval CNS253 174 of 4 0.38Down
Larval Salivary gland1842 374 of 4 2.77Up
Larval midgut1676 434 of 4 2.52Up
Larval tubule1607 1054 of 4 2.40Up
Larval hindgut710 534 of 4 1.07None
Larval fat body4117 4024 of 4 6.20Up
Larval trachea1817 1854 of 4 2.73Up
Larval carcass1260 1024 of 4 1.89Up
S2 cells (growing)2305 444 of 4 3.46Up
Whole fly665 474 of 4

Looking for FBgn0010470. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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