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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010473 through 18771 annotations produced 5 hits



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4318712 (+) // 100.0 //
Probeset : 1627602_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 24 of 4 7.90Up
Head2 ± 10 of 4 0.60None
Eye2 ± 10 of 4 0.54None
Thoracicoabdominal ganglion24 ± 63 of 4 6.30None
Salivary gland6 ± 40 of 4 1.56None
Crop3 ± 10 of 4 0.80None
Midgut1 ± 00 of 4 0.30None
Tubule3 ± 00 of 4 0.90None
Hindgut2 ± 10 of 4 0.50None
Heart0 ± 00 of 4 0.20Down
Fat body3 ± 20 of 4 0.92None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.50None
Male accessory glands5 ± 10 of 4 1.30None
Virgin spermatheca4 ± 10 of 4 1.03None
Mated spermatheca1 ± 00 of 4 0.42None
Adult carcass3 ± 10 of 4 0.80None
Larval CNS7 ± 11 of 4 1.77None
Larval Salivary gland1 ± 00 of 4 0.47None
Larval midgut18 ± 20 of 4 4.78Up
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut1 ± 00 of 4 0.35None
Larval fat body2 ± 00 of 4 0.50None
Larval trachea3 ± 30 of 4 0.88None
Larval carcass3 ± 10 of 4 0.97None
S2 cells (growing)2 ± 00 of 4 0.56None
Whole fly4 ± 10 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4316071 (+) // 100.0 //
Probeset : 1637631_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain288 ± 114 of 438.20Up
Head12 ± 14 of 4 1.70Up
Eye8 ± 02 of 4 1.12None
Thoracicoabdominal ganglion223 ± 244 of 429.60Up
Salivary gland15 ± 22 of 4 2.06Up
Crop8 ± 12 of 4 1.10None
Midgut6 ± 11 of 4 0.80None
Tubule8 ± 02 of 4 1.10None
Hindgut4 ± 02 of 4 0.60Down
Heart5 ± 12 of 4 0.73None
Fat body8 ± 14 of 4 1.08None
Ovary4 ± 03 of 4 0.60Down
Testis3 ± 01 of 4 0.40Down
Male accessory glands5 ± 10 of 4 0.80None
Virgin spermatheca11 ± 14 of 4 1.46None
Mated spermatheca9 ± 23 of 4 1.30None
Adult carcass12 ± 21 of 4 1.60None
Larval CNS78 ± 174 of 410.36Up
Larval Salivary gland6 ± 22 of 4 0.84None
Larval midgut3 ± 00 of 4 0.41Down
Larval tubule5 ± 01 of 4 0.70None
Larval hindgut3 ± 01 of 4 0.46Down
Larval fat body11 ± 22 of 4 1.50None
Larval trachea4 ± 11 of 4 0.53Down
Larval carcass7 ± 14 of 4 1.05None
S2 cells (growing)2 ± 00 of 4 0.30Down
Whole fly7 ± 03 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4318638 (+) // 100.0 //
Probeset : 1636076_a_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 34 of 425.50Up
Head5 ± 10 of 4 2.90None
Eye8 ± 22 of 4 4.22Up
Thoracicoabdominal ganglion38 ± 84 of 418.80Up
Salivary gland3 ± 10 of 4 1.90None
Crop1 ± 00 of 4 0.80None
Midgut3 ± 10 of 4 1.80None
Tubule2 ± 10 of 4 1.30None
Hindgut2 ± 00 of 4 1.10None
Heart6 ± 11 of 4 3.22Up
Fat body10 ± 61 of 4 4.87None
Ovary3 ± 00 of 4 1.70None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 00 of 4 1.10None
Virgin spermatheca11 ± 22 of 4 5.41Up
Mated spermatheca10 ± 21 of 4 4.99None
Adult carcass3 ± 10 of 4 1.50None
Larval CNS12 ± 14 of 4 5.99Up
Larval Salivary gland4 ± 10 of 4 2.27None
Larval midgut5 ± 00 of 4 2.77Up
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut3 ± 10 of 4 1.52None
Larval fat body7 ± 20 of 4 3.90None
Larval trachea4 ± 21 of 4 2.38None
Larval carcass3 ± 10 of 4 1.50None
S2 cells (growing)1 ± 00 of 4 0.89None
Whole fly2 ± 00 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4305695 (+) // 99.36 //
Probeset : 1639004_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 24 of 415.80Up
Head4 ± 11 of 4 2.40None
Eye0 ± 00 of 4 0.26None
Thoracicoabdominal ganglion19 ± 04 of 410.70Up
Salivary gland11 ± 41 of 4 6.03None
Crop4 ± 11 of 4 2.60None
Midgut4 ± 00 of 4 2.20None
Tubule1 ± 00 of 4 1.00None
Hindgut2 ± 00 of 4 1.40None
Heart2 ± 11 of 4 1.49None
Fat body10 ± 61 of 4 5.69None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.90None
Male accessory glands6 ± 20 of 4 3.50None
Virgin spermatheca9 ± 02 of 4 5.03Up
Mated spermatheca12 ± 33 of 4 6.97Up
Adult carcass10 ± 41 of 4 5.50None
Larval CNS7 ± 32 of 4 4.07Up
Larval Salivary gland1 ± 00 of 4 0.85None
Larval midgut4 ± 10 of 4 2.14None
Larval tubule3 ± 00 of 4 1.70None
Larval hindgut1 ± 00 of 4 0.95None
Larval fat body4 ± 10 of 4 2.20None
Larval trachea1 ± 10 of 4 0.72None
Larval carcass3 ± 10 of 4 1.64None
S2 cells (growing)1 ± 00 of 4 0.92None
Whole fly1 ± 00 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4305695 (+) // 99.36 //
Probeset : 1641128_a_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 24 of 423.10Up
Head2 ± 10 of 4 3.90None
Eye0 ± 00 of 4 1.18None
Thoracicoabdominal ganglion10 ± 33 of 419.00None
Salivary gland2 ± 10 of 4 5.27None
Crop2 ± 10 of 4 4.70None
Midgut2 ± 00 of 4 4.00None
Tubule2 ± 00 of 4 4.30Up
Hindgut0 ± 00 of 4 1.10None
Heart2 ± 10 of 4 4.64None
Fat body0 ± 00 of 4 1.23None
Ovary0 ± 00 of 4 0.70None
Testis1 ± 10 of 4 2.50None
Male accessory glands1 ± 00 of 4 1.80None
Virgin spermatheca0 ± 00 of 4 1.05None
Mated spermatheca1 ± 00 of 4 2.68None
Adult carcass5 ± 20 of 4 9.30None
Larval CNS1 ± 00 of 4 2.09None
Larval Salivary gland0 ± 00 of 4 1.27None
Larval midgut0 ± 00 of 4 1.23None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut0 ± 00 of 4 1.05None
Larval fat body2 ± 10 of 4 4.00None
Larval trachea2 ± 20 of 4 4.41None
Larval carcass1 ± 00 of 4 2.68None
S2 cells (growing)0 ± 00 of 4 0.64None
Whole fly0 ± 00 of 4

Looking for FBgn0010473. 5 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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