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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010482 through 18771 annotations produced 2 hits



Fusion2 (l(2)01289):

Annotation Number : CG9432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010482
Gbrowse : chr2R:2614333-2627837 (-) // 100.0 //
Probeset : 1630402_at
Accessions : protein= NP_001036474; /// NP_001036475; /// NP_001163064; /// NP_001163065; /// NP_001163066; /// NP_652026; /// NP_724492;, nucleotide= NM_001043009; /// NM_001043010; /// NM_001169593; /// NM_001169594; /// NM_001169595; /// NM_143769; /// NM_165485;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0010482.
VDRC has 3 RNAi stocks for FBgn0010482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 14 of 4 0.10Down
Head53 24 of 4 0.40Down
Eye6 04 of 4 0.06Down
Thoracicoabdominal ganglion9 24 of 4 0.10Down
Salivary gland6 20 of 4 0.05Down
Crop868 244 of 4 7.10Up
Midgut78 14 of 4 0.60Down
Tubule7 02 of 4 0.10Down
Hindgut383 54 of 4 3.10Up
Heart261 404 of 4 2.12Up
Fat body24 34 of 4 0.20Down
Ovary7 14 of 4 0.10Down
Testis8 14 of 4 0.10Down
Male accessory glands49 14 of 4 0.40Down
Virgin spermatheca39 24 of 4 0.32Down
Mated spermatheca59 64 of 4 0.49Down
Adult carcass436 194 of 4 3.50Up
Larval CNS12 14 of 4 0.10Down
Larval Salivary gland10 21 of 4 0.08Down
Larval midgut58 34 of 4 0.48Down
Larval tubule7 13 of 4 0.10Down
Larval hindgut499 144 of 4 4.05Up
Larval fat body121 114 of 4 1.00None
Larval trachea52 274 of 4 0.42Down
Larval carcass2185 2274 of 417.75Up
S2 cells (growing)2 00 of 4 0.02Down
Whole fly123 64 of 4



Fusion2 (l(2)01289):

Annotation Number : CG9432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010482
Gbrowse : chr2R:2608603-2628149 (-) // 100.0 //
Probeset : 1639033_at
Accessions : protein= NP_001036474; /// NP_001036475; /// NP_001163064; /// NP_001163065; /// NP_001163066; /// NP_652026; /// NP_724492;, nucleotide= NM_001043009; /// NM_001043010; /// NM_001169593; /// NM_001169594; /// NM_001169595; /// NM_143769; /// NM_165485;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0010482.
VDRC has 3 RNAi stocks for FBgn0010482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 13 of 4 0.10Down
Head192 84 of 4 1.00None
Eye16 22 of 4 0.08Down
Thoracicoabdominal ganglion31 24 of 4 0.20Down
Salivary gland9 20 of 4 0.05Down
Crop565 164 of 4 2.90Up
Midgut73 34 of 4 0.40Down
Tubule10 01 of 4 0.10Down
Hindgut291 64 of 4 1.50Up
Heart244 284 of 4 1.23None
Fat body30 64 of 4 0.15Down
Ovary5 01 of 4 0.00Down
Testis17 14 of 4 0.10Down
Male accessory glands63 12 of 4 0.30Down
Virgin spermatheca48 34 of 4 0.24Down
Mated spermatheca62 34 of 4 0.32Down
Adult carcass809 274 of 4 4.10Up
Larval CNS26 34 of 4 0.14Down
Larval Salivary gland6 01 of 4 0.03Down
Larval midgut47 24 of 4 0.24Down
Larval tubule8 20 of 4 0.00Down
Larval hindgut244 184 of 4 1.24None
Larval fat body35 24 of 4 0.20Down
Larval trachea41 234 of 4 0.21Down
Larval carcass1156 1224 of 4 5.84Up
S2 cells (growing)4 00 of 4 0.02Down
Whole fly198 64 of 4

Looking for FBgn0010482. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime