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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010488 through 18771 annotations produced 1 hits



lethal (2) 01424 (NAT1):

Annotation Number : CG3845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010488
Gbrowse : chr2R:8803501-8810745 (+) // 100.0 //
Probeset : 1624361_s_at
Accessions : protein= NP_001033943; /// NP_652027; /// NP_725242;, nucleotide= NM_001038854; /// NM_143770; /// NM_165961;
Pathway : 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005488 // bind
FlyMine data for FBgn0010488.
TRiP has 2 RNAi stocks for FBgn0010488 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1080 314 of 4 1.50Up
Head609 354 of 4 0.80None
Eye1380 554 of 4 1.89Up
Thoracicoabdominal ganglion1097 504 of 4 1.50Up
Salivary gland591 454 of 4 0.81None
Crop821 274 of 4 1.10None
Midgut589 104 of 4 0.80Down
Tubule588 214 of 4 0.80Down
Hindgut724 194 of 4 1.00None
Heart1040 144 of 4 1.43Up
Fat body635 914 of 4 0.87None
Ovary1056 94 of 4 1.40Up
Testis683 74 of 4 0.90None
Male accessory glands593 284 of 4 0.80Down
Virgin spermatheca803 354 of 4 1.10None
Mated spermatheca687 134 of 4 0.94None
Adult carcass608 414 of 4 0.80None
Larval CNS942 344 of 4 1.29Up
Larval Salivary gland968 154 of 4 1.33Up
Larval midgut1112 964 of 4 1.53Up
Larval tubule2077 524 of 4 2.80Up
Larval hindgut967 424 of 4 1.33Up
Larval fat body1593 1434 of 4 2.20Up
Larval trachea1364 1724 of 4 1.87Up
Larval carcass1322 1704 of 4 1.81Up
S2 cells (growing)1070 114 of 4 1.47Up
Whole fly728 414 of 4

Looking for FBgn0010488. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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