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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010516 through 18771 annotations produced 1 hits



Electron transfer flavoprotein (wal):

Annotation Number : CG8996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010516
Gbrowse : chr2R:7576431-7578380 (-) // 100.0 //
Probeset : 1632532_s_at
Accessions : protein= NP_476975; /// NP_725073;, nucleotide= NM_057627; /// NM_165847;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005811 // lipid particle // infe
Interpro : 0009055 // electron carrier activity // inferred from sequence or structural similarity /// 0009055 // electron carrier
FlyMine data for FBgn0010516.
Homophila reports that CG8996 is a close match (2e-104) to human gene ETFA;GA2;MADD (NP_000117), a gene associated with Glutaricaciduria, type IIA, 231680 (3).
TRiP has 1 RNAi stocks for FBgn0010516 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010516 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain429 ± 144 of 4 0.50Down
Head1467 ± 464 of 4 1.70Up
Eye818 ± 514 of 4 0.94None
Thoracicoabdominal ganglion468 ± 144 of 4 0.50Down
Salivary gland587 ± 294 of 4 0.67Down
Crop1617 ± 364 of 4 1.90Up
Midgut1412 ± 594 of 4 1.60Up
Tubule3073 ± 1024 of 4 3.50Up
Hindgut1523 ± 254 of 4 1.70Up
Heart1867 ± 954 of 4 2.14Up
Fat body2598 ± 2564 of 4 2.98Up
Ovary616 ± 144 of 4 0.70Down
Testis127 ± 54 of 4 0.10Down
Male accessory glands685 ± 434 of 4 0.80Down
Virgin spermatheca3567 ± 1034 of 4 4.09Up
Mated spermatheca3347 ± 1484 of 4 3.84Up
Adult carcass1847 ± 594 of 4 2.10Up
Larval CNS502 ± 464 of 4 0.58Down
Larval Salivary gland1177 ± 564 of 4 1.35Up
Larval midgut1140 ± 234 of 4 1.31Up
Larval tubule1834 ± 1294 of 4 2.10Up
Larval hindgut1501 ± 334 of 4 1.72Up
Larval fat body1261 ± 1704 of 4 1.40None
Larval trachea986 ± 674 of 4 1.13Up
Larval carcass1027 ± 354 of 4 1.18Up
S2 cells (growing)690 ± 24 of 4 0.79Down
Whole fly872 ± 214 of 4

Looking for FBgn0010516. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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