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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010549 through 18771 annotations produced 1 hits



Hsp related (l(2)03659):

Annotation Number : CG8799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010549
Gbrowse : chr2R:5277962-5282638 (+) // 100.0 //
Probeset : 1637046_at
Accessions : protein= NP_610482;, nucleotide= NM_136638;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0010549.
Homophila reports that CG8799 is a close match (1e-11) to human gene ABCD3;PMP70;PXMP1 (NP_002849), a gene associated with Zellweger syndrome-2 (3).
VDRC has 3 RNAi stocks for FBgn0010549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 23 of 4 0.30Down
Head21 ± 92 of 4 0.40Down
Eye16 ± 63 of 4 0.29Down
Thoracicoabdominal ganglion14 ± 23 of 4 0.30Down
Salivary gland23 ± 51 of 4 0.41Down
Crop18 ± 12 of 4 0.30Down
Midgut84 ± 214 of 4 1.40None
Tubule18 ± 42 of 4 0.30Down
Hindgut127 ± 174 of 4 2.20Up
Heart1 ± 00 of 4 0.03Down
Fat body7 ± 90 of 4 0.12Down
Ovary55 ± 24 of 4 0.90None
Testis21 ± 14 of 4 0.40Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca28 ± 21 of 4 0.49Down
Mated spermatheca19 ± 60 of 4 0.34Down
Adult carcass81 ± 34 of 4 1.40None
Larval CNS6 ± 10 of 4 0.10Down
Larval Salivary gland6 ± 20 of 4 0.10Down
Larval midgut30 ± 42 of 4 0.52Down
Larval tubule59 ± 114 of 4 1.00None
Larval hindgut30 ± 74 of 4 0.52Down
Larval fat body17 ± 42 of 4 0.30Down
Larval trachea12 ± 82 of 4 0.21Down
Larval carcass15 ± 32 of 4 0.27Down
S2 cells (growing)4 ± 10 of 4 0.08Down
Whole fly58 ± 84 of 4

Looking for FBgn0010549. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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