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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010551 through 18771 annotations produced 1 hits



lethal (2) 03709 (l(2)03709):

Annotation Number : CG15081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010551
Gbrowse : chr2R:14706989-14709346 (+) // 100.0 //
Probeset : 1637342_s_at
Accessions : protein= NP_001097371; /// NP_001097372; /// NP_001097373; /// NP_652030; /// NP_725831; /// NP_725832;, nucleotide= NM_001103901; /// NM_001103902; /// NM_001103903; /// NM_143773; /// NM_166311; /// NM_166312;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0010551.
BDGP gene expression has embryonic in situ data for l(2)03709: 7 pix of staining in 5 body parts.
Homophila reports that CG15081 is a close match (1e-53) to human gene PHB (NP_002625), a gene associated with Breast cancer, sporadic (3).
TRiP has 1 RNAi stocks for FBgn0010551 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain939 ± 304 of 4 0.70Down
Head910 ± 254 of 4 0.70Down
Eye428 ± 184 of 4 0.34Down
Thoracicoabdominal ganglion1142 ± 374 of 4 0.90None
Salivary gland862 ± 184 of 4 0.69Down
Crop1165 ± 274 of 4 0.90None
Midgut1054 ± 304 of 4 0.80Down
Tubule1536 ± 414 of 4 1.20Up
Hindgut1630 ± 294 of 4 1.30Up
Heart1052 ± 244 of 4 0.84Down
Fat body1792 ± 1424 of 4 1.43Up
Ovary1847 ± 174 of 4 1.50Up
Testis255 ± 194 of 4 0.20Down
Male accessory glands671 ± 404 of 4 0.50Down
Virgin spermatheca1833 ± 364 of 4 1.46Up
Mated spermatheca1889 ± 1154 of 4 1.50Up
Adult carcass952 ± 564 of 4 0.80Down
Larval CNS1303 ± 564 of 4 1.04None
Larval Salivary gland1678 ± 674 of 4 1.34Up
Larval midgut1004 ± 904 of 4 0.80None
Larval tubule605 ± 134 of 4 0.50Down
Larval hindgut1656 ± 974 of 4 1.32Up
Larval fat body847 ± 714 of 4 0.70Down
Larval trachea1356 ± 2194 of 4 1.08None
Larval carcass1094 ± 1364 of 4 0.87None
S2 cells (growing)1324 ± 194 of 4 1.05None
Whole fly1256 ± 324 of 4

Looking for FBgn0010551. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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