FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010575 through 18771 annotations produced 3 hits

scribbler (sbb):

Annotation Number : CG5580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010575
Gbrowse : chr2R:14166484-14176255 (-) // 100.0 //
Probeset : 1635211_at
Accessions : protein= NP_001163189; /// NP_001163190; /// NP_001163191; /// NP_524678; /// NP_995883; /// NP_995884;, nucleotide= NM_001169718; /// NM_001169719; /// NM_001169720; /// NM_079939; /// NM_206161; /// NM_206162;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 //
FlyMine data for FBgn0010575.
BDGP gene expression has embryonic in situ data for sbb: 15 pix of staining in 21 body parts.
BioGrid reports that CG5580 interacts with CG6459 CG8942 CG14228 .
TRiP has 1 RNAi stocks for FBgn0010575 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010575 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	514 ± 26	4 of 4	5.20	Up
Head	161 ± 6	4 of 4	1.60	Up
Eye	270 ± 14	4 of 4	2.75	Up
Thoracicoabdominal ganglion	553 ± 21	4 of 4	5.60	Up
Salivary gland	139 ± 22	4 of 4	1.42	None
Crop	257 ± 3	4 of 4	2.60	Up
Midgut	94 ± 6	4 of 4	1.00	None
Tubule	98 ± 8	4 of 4	1.00	None
Hindgut	160 ± 6	4 of 4	1.60	Up
Heart	164 ± 8	4 of 4	1.67	Up
Fat body	172 ± 7	4 of 4	1.75	Up
Ovary	124 ± 17	4 of 4	1.30	None
Testis	39 ± 4	4 of 4	0.40	Down
Male accessory glands	87 ± 7	4 of 4	0.90	None
Virgin spermatheca	479 ± 25	4 of 4	4.88	Up
Mated spermatheca	545 ± 17	4 of 4	5.55	Up
Adult carcass	139 ± 19	4 of 4	1.40	None
Larval CNS	932 ± 57	4 of 4	9.48	Up
Larval Salivary gland	183 ± 4	4 of 4	1.87	Up
Larval midgut	90 ± 12	4 of 4	0.92	None
Larval tubule	128 ± 4	4 of 4	1.30	None
Larval hindgut	254 ± 10	4 of 4	2.59	Up
Larval fat body	88 ± 6	4 of 4	0.90	None
Larval trachea	502 ± 40	4 of 4	5.11	Up
Larval carcass	283 ± 31	4 of 4	2.89	Up
S2 cells (growing)	247 ± 7	4 of 4	2.51	Up
Whole fly	98 ± 11	4 of 4

scribbler (sbb):

Annotation Number : GM04742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010575
Gbrowse : chr2R:14243487-14244764 (-) // 99.69 //
Probeset : 1626352_at
Accessions : protein= NP_001163189; /// NP_001163190; /// NP_001163191; /// NP_524678; /// NP_995883; /// NP_995884;, nucleotide= NM_001169718; /// NM_001169719; /// NM_001169720; /// NM_079939; /// NM_206161; /// NM_206162;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 //
FlyMine data for FBgn0010575.
BDGP gene expression has embryonic in situ data for sbb: 15 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0010575 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010575 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	506 ± 30	4 of 4	14.10	Up
Head	58 ± 3	4 of 4	1.60	Up
Eye	106 ± 4	4 of 4	2.97	Up
Thoracicoabdominal ganglion	280 ± 14	4 of 4	7.80	Up
Salivary gland	80 ± 19	4 of 4	2.24	None
Crop	181 ± 16	4 of 4	5.10	Up
Midgut	68 ± 4	4 of 4	1.90	Up
Tubule	97 ± 8	4 of 4	2.70	Up
Hindgut	141 ± 4	4 of 4	4.00	Up
Heart	66 ± 5	4 of 4	1.86	Up
Fat body	52 ± 9	4 of 4	1.48	Up
Ovary	27 ± 0	4 of 4	0.80	None
Testis	16 ± 0	4 of 4	0.50	Down
Male accessory glands	69 ± 2	4 of 4	1.90	Up
Virgin spermatheca	101 ± 4	4 of 4	2.84	Up
Mated spermatheca	120 ± 12	4 of 4	3.37	Up
Adult carcass	87 ± 6	4 of 4	2.50	Up
Larval CNS	228 ± 27	4 of 4	6.38	Up
Larval Salivary gland	68 ± 2	4 of 4	1.92	Up
Larval midgut	27 ± 3	4 of 4	0.77	None
Larval tubule	78 ± 3	4 of 4	2.20	Up
Larval hindgut	50 ± 5	4 of 4	1.41	None
Larval fat body	60 ± 4	4 of 4	1.70	Up
Larval trachea	214 ± 8	4 of 4	5.98	Up
Larval carcass	77 ± 10	4 of 4	2.16	Up
S2 cells (growing)	102 ± 6	4 of 4	2.85	Up
Whole fly	35 ± 3	4 of 4

scribbler (sbb):

Annotation Number : HDC07119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010575
Gbrowse : chr2R:14177077-14177347 (-) // 100.0 //
Probeset : 1624001_at
Accessions : protein= NP_001163189; /// NP_001163190; /// NP_001163191; /// NP_524678; /// NP_995883; /// NP_995884;, nucleotide= NM_001169718; /// NM_001169719; /// NM_001169720; /// NM_079939; /// NM_206161; /// NM_206162;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 //
FlyMine data for FBgn0010575.
BDGP gene expression has embryonic in situ data for sbb: 15 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0010575 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010575 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	2 of 4	1.10	None
Head	4 ± 1	0 of 4	0.60	None
Eye	10 ± 0	0 of 4	1.25	None
Thoracicoabdominal ganglion	5 ± 0	0 of 4	0.70	None
Salivary gland	12 ± 3	0 of 4	1.50	None
Crop	10 ± 1	0 of 4	1.20	None
Midgut	6 ± 1	0 of 4	0.80	None
Tubule	7 ± 1	0 of 4	0.90	None
Hindgut	8 ± 1	0 of 4	1.00	None
Heart	8 ± 0	0 of 4	1.08	None
Fat body	5 ± 6	0 of 4	0.68	None
Ovary	6 ± 0	0 of 4	0.80	None
Testis	5 ± 1	0 of 4	0.60	None
Male accessory glands	15 ± 4	0 of 4	1.90	None
Virgin spermatheca	2 ± 0	0 of 4	0.34	Down
Mated spermatheca	5 ± 1	0 of 4	0.67	None
Adult carcass	11 ± 1	0 of 4	1.40	None
Larval CNS	9 ± 1	3 of 4	1.13	None
Larval Salivary gland	7 ± 2	0 of 4	0.89	None
Larval midgut	10 ± 3	0 of 4	1.29	None
Larval tubule	8 ± 1	0 of 4	1.00	None
Larval hindgut	6 ± 1	0 of 4	0.83	None
Larval fat body	5 ± 1	0 of 4	0.70	None
Larval trachea	14 ± 0	4 of 4	1.78	Up
Larval carcass	10 ± 2	0 of 4	1.23	None
S2 cells (growing)	12 ± 0	0 of 4	1.52	None
Whole fly	8 ± 1	0 of 4

Looking for FBgn0010575. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720