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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0010602 through 18771 annotations produced 1 hits

ubiquitin-conjugating enzyme 9 (lwr):

Annotation Number : CG3018
Flybase ID : FBgn0010602
Gbrowse : chr2L:541234-542572 (-) // 100.0 //
Probeset : 1636282_s_at
Accessions : protein= NP_476978; /// NP_722637;, nucleotide= NM_057630; /// NM_164385;
Pathway : "0000780 // condensed nuclear chromosome
Interpro : centromeric region // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // inferred from
FlyMine data for FBgn0010602.
Homophila reports that CG3018 is a close match (2e-13) to human gene RAD6A;UBE2A (NP_861427), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG3018 interacts with CG5773 CG7803 CG32810 CG7761 CG9703 CG7831 CG1763 CG2711 CG9588 CG13511 CG18538 Dmel CG8923 CG9771 CG5848 .
TRiP has 4 RNAi stocks for FBgn0010602 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010602 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain834 224 of 4 1.00None
Head573 394 of 4 0.70Down
Eye519 494 of 4 0.59Down
Thoracicoabdominal ganglion840 204 of 4 1.00None
Salivary gland1302 1374 of 4 1.48Up
Crop800 224 of 4 0.90None
Midgut663 134 of 4 0.80Down
Tubule491 84 of 4 0.60Down
Hindgut582 84 of 4 0.70Down
Heart474 304 of 4 0.54Down
Fat body571 894 of 4 0.65Down
Ovary1378 114 of 4 1.60Up
Testis505 224 of 4 0.60Down
Male accessory glands1576 644 of 4 1.80Up
Virgin spermatheca1330 424 of 4 1.51Up
Mated spermatheca1345 514 of 4 1.53Up
Adult carcass420 444 of 4 0.50Down
Larval CNS1918 814 of 4 2.18Up
Larval Salivary gland1120 1104 of 4 1.28None
Larval midgut470 104 of 4 0.54Down
Larval tubule773 184 of 4 0.90None
Larval hindgut927 154 of 4 1.06None
Larval fat body705 304 of 4 0.80Down
Larval trachea1276 1264 of 4 1.45Up
Larval carcass1001 394 of 4 1.14None
S2 cells (growing)1543 174 of 4 1.76Up
Whole fly878 494 of 4

Looking for FBgn0010602. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime