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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010607 through 18771 annotations produced 1 hits



lethal (2) 05714 (l(2)05714):

Annotation Number : CG8886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010607
Gbrowse : chr2L:4970134-4971453 (-) // 100.0 //
Probeset : 1627056_a_at
Accessions : protein= NP_652033; /// NP_723031;, nucleotide= NM_143776; /// NM_164605;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0010607.
BioGrid reports that CG8886 interacts with CG8886 .
VDRC has 2 RNAi stocks for FBgn0010607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 44 of 4 0.90Down
Head58 ± 44 of 4 0.50Down
Eye63 ± 14 of 4 0.52Down
Thoracicoabdominal ganglion76 ± 64 of 4 0.60Down
Salivary gland75 ± 84 of 4 0.62Down
Crop61 ± 14 of 4 0.50Down
Midgut51 ± 44 of 4 0.40Down
Tubule59 ± 84 of 4 0.50Down
Hindgut37 ± 04 of 4 0.30Down
Heart34 ± 34 of 4 0.28Down
Fat body39 ± 44 of 4 0.32Down
Ovary265 ± 24 of 4 2.20Up
Testis71 ± 64 of 4 0.60Down
Male accessory glands75 ± 44 of 4 0.60Down
Virgin spermatheca82 ± 24 of 4 0.67Down
Mated spermatheca91 ± 64 of 4 0.75Down
Adult carcass42 ± 74 of 4 0.40Down
Larval CNS176 ± 114 of 4 1.45Up
Larval Salivary gland119 ± 64 of 4 0.98None
Larval midgut32 ± 04 of 4 0.26Down
Larval tubule41 ± 44 of 4 0.30Down
Larval hindgut37 ± 14 of 4 0.31Down
Larval fat body60 ± 14 of 4 0.50Down
Larval trachea70 ± 14 of 4 0.58Down
Larval carcass52 ± 34 of 4 0.43Down
S2 cells (growing)78 ± 54 of 4 0.64Down
Whole fly121 ± 24 of 4

Looking for FBgn0010607. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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