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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0010620 through 18771 annotations produced 1 hits

SRY interacting protein 1 (Sip1):

Annotation Number : CG10939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010620
Gbrowse : chr2R:13282100-13292678 (+) // 100.0 //
Probeset : 1636440_at
Accessions : protein= NP_524712;, nucleotide= NM_079973;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0010620.
BDGP gene expression has embryonic in situ data for Sip1: 23 pix of staining in 26 body parts.
Homophila reports that CG10939 is a close match (3e-17) to human gene EBP50;NHERF1;NPHLOP2;SLC9A3R1 (NP_004243), a gene associated with Nephrolithiasis/osteoporosis, hypophosphatemic, 2, 612287 (3).
BioGrid reports that CG10939 interacts with CG17957 CG4853 .
VDRC has 3 RNAi stocks for FBgn0010620 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 33 of 4 0.00Down
Head462 174 of 4 1.70Up
Eye186 174 of 4 0.67Down
Thoracicoabdominal ganglion13 14 of 4 0.00Down
Salivary gland1430 394 of 4 5.12Up
Crop738 254 of 4 2.60Up
Midgut147 44 of 4 0.50Down
Tubule369 84 of 4 1.30Up
Hindgut1027 124 of 4 3.70Up
Heart20 14 of 4 0.07Down
Fat body18 61 of 4 0.06Down
Ovary444 114 of 4 1.60Up
Testis91 64 of 4 0.30Down
Male accessory glands2418 924 of 4 8.70Up
Virgin spermatheca224 44 of 4 0.80None
Mated spermatheca324 484 of 4 1.16None
Adult carcass239 114 of 4 0.90None
Larval CNS360 254 of 4 1.29Up
Larval Salivary gland1142 364 of 4 4.09Up
Larval midgut341 224 of 4 1.22None
Larval tubule170 114 of 4 0.60Down
Larval hindgut744 124 of 4 2.67Up
Larval fat body8 20 of 4 0.00Down
Larval trachea964 474 of 4 3.46Up
Larval carcass626 154 of 4 2.25Up
S2 cells (growing)5 10 of 4 0.02Down
Whole fly279 184 of 4

Looking for FBgn0010620. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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