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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010660 through 18771 annotations produced 1 hits



Nup214 (Nup214):

Annotation Number : CG3820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010660
Gbrowse : chr2R:18806458-18812255 (-) // 100.0 //
Probeset : 1629305_at
Accessions : protein= NP_652039;, nucleotide= NM_143782;
Pathway : docking // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // pr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from mutant phenotype
FlyMine data for FBgn0010660.
BioGrid reports that CG3820 interacts with CG6819 .
TRiP has 1 RNAi stocks for FBgn0010660 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain108 34 of 4 1.10None
Head51 44 of 4 0.50Down
Eye47 54 of 4 0.50Down
Thoracicoabdominal ganglion93 44 of 4 1.00None
Salivary gland82 84 of 4 0.85None
Crop57 14 of 4 0.60Down
Midgut53 44 of 4 0.60Down
Tubule72 24 of 4 0.80Down
Hindgut61 14 of 4 0.60Down
Heart45 04 of 4 0.47Down
Fat body59 124 of 4 0.62Down
Ovary208 44 of 4 2.20Up
Testis105 44 of 4 1.10None
Male accessory glands78 74 of 4 0.80None
Virgin spermatheca74 14 of 4 0.77None
Mated spermatheca85 84 of 4 0.89None
Adult carcass54 54 of 4 0.60Down
Larval CNS185 94 of 4 1.93Up
Larval Salivary gland139 84 of 4 1.45Up
Larval midgut49 44 of 4 0.51Down
Larval tubule57 14 of 4 0.60Down
Larval hindgut80 24 of 4 0.84None
Larval fat body153 234 of 4 1.60None
Larval trachea99 84 of 4 1.04None
Larval carcass75 44 of 4 0.79None
S2 cells (growing)229 54 of 4 2.39Up
Whole fly96 74 of 4

Looking for FBgn0010660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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