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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010741 through 18771 annotations produced 1 hits



lethal (3) 01239 (l(3)01239):

Annotation Number : CG6302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010741
Gbrowse : chr3L:11066565-11067490 (-) // 100.0 //
Probeset : 1638229_at
Accessions : protein= NP_729659;, nucleotide= NM_168438;
Pathway : engulfment // inferred from mutant phenotype /// 0048477 // oogenesis // inferred from mutant phenotype"
Interpro : 0016272 // prefoldin complex // inferred from electronic annotation /// 0016272 // prefoldin complex // inferred from se
FlyMine data for FBgn0010741.
VDRC has 1 RNAi stocks for FBgn0010741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 ± 164 of 4 0.60Down
Head343 ± 194 of 4 0.60Down
Eye379 ± 74 of 4 0.64Down
Thoracicoabdominal ganglion422 ± 174 of 4 0.70Down
Salivary gland316 ± 134 of 4 0.54Down
Crop709 ± 324 of 4 1.20None
Midgut521 ± 54 of 4 0.90None
Tubule1188 ± 824 of 4 2.00Up
Hindgut497 ± 114 of 4 0.80None
Heart354 ± 164 of 4 0.60Down
Fat body300 ± 324 of 4 0.51Down
Ovary845 ± 144 of 4 1.40Up
Testis164 ± 44 of 4 0.30Down
Male accessory glands715 ± 814 of 4 1.20None
Virgin spermatheca270 ± 184 of 4 0.46Down
Mated spermatheca350 ± 194 of 4 0.59Down
Adult carcass288 ± 94 of 4 0.50Down
Larval CNS934 ± 264 of 4 1.59Up
Larval Salivary gland943 ± 694 of 4 1.60Up
Larval midgut437 ± 284 of 4 0.74Down
Larval tubule295 ± 44 of 4 0.50Down
Larval hindgut743 ± 454 of 4 1.26Up
Larval fat body193 ± 194 of 4 0.30Down
Larval trachea926 ± 1014 of 4 1.57Up
Larval carcass918 ± 744 of 4 1.56Up
S2 cells (growing)993 ± 254 of 4 1.69Up
Whole fly589 ± 414 of 4

Looking for FBgn0010741. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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