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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010762 through 18771 annotations produced 1 hits



simjang (simj):

Annotation Number : CG32067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010762
Gbrowse : chr3L:10657842-10682480 (+) // 100.0 //
Probeset : 1625325_s_at
Accessions : protein= NP_648407; /// NP_729624; /// NP_729625;, nucleotide= NM_140150; /// NM_168420; /// NM_168421;
Pathway : DNA-dependent // inferred from sequence or structural similarity"
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0010762.
VDRC has 2 RNAi stocks for FBgn0010762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 94 of 4 3.90Up
Head17 10 of 4 0.40Down
Eye11 30 of 4 0.26Down
Thoracicoabdominal ganglion85 74 of 4 2.00Up
Salivary gland3 00 of 4 0.09Down
Crop23 40 of 4 0.60Down
Midgut9 10 of 4 0.20Down
Tubule12 10 of 4 0.30Down
Hindgut21 10 of 4 0.50Down
Heart18 30 of 4 0.44Down
Fat body11 100 of 4 0.27Down
Ovary76 24 of 4 1.80Up
Testis75 54 of 4 1.80Up
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca6 10 of 4 0.15Down
Mated spermatheca14 40 of 4 0.34Down
Adult carcass8 20 of 4 0.20Down
Larval CNS49 124 of 4 1.17None
Larval Salivary gland27 40 of 4 0.64Down
Larval midgut5 20 of 4 0.14Down
Larval tubule29 41 of 4 0.70None
Larval hindgut6 20 of 4 0.15Down
Larval fat body24 20 of 4 0.60Down
Larval trachea34 110 of 4 0.81None
Larval carcass4 10 of 4 0.10Down
S2 cells (growing)126 54 of 4 2.98Up
Whole fly42 32 of 4

Looking for FBgn0010762. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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