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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010768 through 18771 annotations produced 1 hits



squeeze (sqz):

Annotation Number : CG5557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010768
Gbrowse : chr3R:14989942-14996292 (+) // 99.88 //
Probeset : 1630772_at
Accessions : protein= NP_524403;, nucleotide= NM_079679;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding tran
FlyMine data for FBgn0010768.
Homophila reports that CG5557 is a close match (5e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 24 of 4 1.50Up
Head21 24 of 4 0.60Down
Eye19 04 of 4 0.59Down
Thoracicoabdominal ganglion30 14 of 4 0.90None
Salivary gland8 31 of 4 0.26Down
Crop22 24 of 4 0.70Down
Midgut11 22 of 4 0.30Down
Tubule10 03 of 4 0.30Down
Hindgut10 04 of 4 0.30Down
Heart12 13 of 4 0.38Down
Fat body14 33 of 4 0.44Down
Ovary123 24 of 4 3.70Up
Testis6 13 of 4 0.20Down
Male accessory glands5 00 of 4 0.20Down
Virgin spermatheca7 04 of 4 0.22Down
Mated spermatheca10 14 of 4 0.31Down
Adult carcass11 32 of 4 0.30Down
Larval CNS115 114 of 4 3.44Up
Larval Salivary gland16 14 of 4 0.48Down
Larval midgut17 34 of 4 0.51Down
Larval tubule19 14 of 4 0.60Down
Larval hindgut31 14 of 4 0.93None
Larval fat body9 21 of 4 0.30Down
Larval trachea84 274 of 4 2.54Up
Larval carcass53 24 of 4 1.60Up
S2 cells (growing)107 44 of 4 3.22Up
Whole fly33 34 of 4

Looking for FBgn0010768. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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