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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010786 through 18771 annotations produced 2 hits



lethal (3) 02640 /// male specific transcript 57D (l(3)02640 /// Mst57Db):

Annotation Number : CG5016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011669
Gbrowse : chr3R:21656443-21656635 (-) // 100.0 //
Probeset : 1628649_at
Accessions : protein= NP_524499; /// NP_612103;, nucleotide= NM_079775; /// NM_138259;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0004418 // hydroxymethylbilane synthase activity // inferred from sequence or structural similarity /// 0004418 // hydro
FlyMine data for FBgn0011669.
VDRC has 1 RNAi stocks for FBgn0011669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye5 20 of 4 0.00Down
Thoracicoabdominal ganglion11 61 of 4 0.00Down
Salivary gland15 30 of 4 0.01Down
Crop5 10 of 4 0.00Down
Midgut7 30 of 4 0.00Down
Tubule6 10 of 4 0.00Down
Hindgut9 40 of 4 0.00Down
Heart11 20 of 4 0.00Down
Fat body11 90 of 4 0.00Down
Ovary32 311 of 4 0.00Down
Testis533 2884 of 4 0.20Down
Male accessory glands9676 3724 of 4 3.40Up
Virgin spermatheca6 20 of 4 0.00Down
Mated spermatheca7 10 of 4 0.00Down
Adult carcass577 2273 of 4 0.20Down
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland5 20 of 4 0.00Down
Larval midgut41 122 of 4 0.01Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut11 50 of 4 0.00Down
Larval fat body4 30 of 4 0.00Down
Larval trachea4 50 of 4 0.00Down
Larval carcass2 10 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly2872 1374 of 4



lethal (3) 02640 (l(3)02640):

Annotation Number : CG9165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010786
Gbrowse : chr3L:1334876-1339407 (+) // 100.0 //
Probeset : 1635542_at
Accessions : protein= NP_612103;, nucleotide= NM_138259;
Interpro : 0004418 // hydroxymethylbilane synthase activity // inferred from sequence or structural similarity /// 0004418 // hydro
FlyMine data for FBgn0010786.
Homophila reports that CG9165 is a close match (9e-79) to human gene HMBS;PBGD;UPS (NP_001019553), a gene associated with Porphyria, acute intermittent, 176000 (3);Porphyria, acute intermittent, nonerythroid variant, 176000 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain441 144 of 4 1.30Up
Head247 114 of 4 0.70Down
Eye203 104 of 4 0.60Down
Thoracicoabdominal ganglion488 244 of 4 1.40Up
Salivary gland287 64 of 4 0.85None
Crop184 74 of 4 0.50Down
Midgut130 54 of 4 0.40Down
Tubule122 114 of 4 0.40Down
Hindgut113 54 of 4 0.30Down
Heart900 424 of 4 2.67Up
Fat body1021 1714 of 4 3.03Up
Ovary555 364 of 4 1.60Up
Testis168 124 of 4 0.50Down
Male accessory glands41 24 of 4 0.10Down
Virgin spermatheca115 34 of 4 0.34Down
Mated spermatheca174 134 of 4 0.52Down
Adult carcass1112 344 of 4 3.30Up
Larval CNS152 274 of 4 0.45Down
Larval Salivary gland62 24 of 4 0.18Down
Larval midgut130 24 of 4 0.39Down
Larval tubule49 74 of 4 0.10Down
Larval hindgut249 434 of 4 0.74None
Larval fat body180 64 of 4 0.50Down
Larval trachea182 94 of 4 0.54Down
Larval carcass264 354 of 4 0.78None
S2 cells (growing)640 234 of 4 1.90Up
Whole fly337 184 of 4

Looking for FBgn0010786. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime