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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010803 through 18771 annotations produced 3 hits



Tryptophanyl-tRNA synthetase /// salivary gland-expressed bHLH (Aats-trp /// sage):

Annotation Number : CG9735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010803
Gbrowse : chr3R:5089551-5092670 (-) // 99.52 //
Probeset : 1629619_at
Accessions : protein= NP_524826; /// NP_731327;, nucleotide= NM_080087; /// NM_169264;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // c
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transc
FlyMine data for FBgn0010803.
BioGrid reports that CG9735 interacts with CG4528 Dmel CG18350 .
VDRC has 3 RNAi stocks for FBgn0010803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 4.40Up
Head12 13 of 4 1.00None
Eye22 04 of 4 1.83Up
Thoracicoabdominal ganglion42 34 of 4 3.50Up
Salivary gland390 874 of 432.17Up
Crop22 34 of 4 1.90Up
Midgut11 20 of 4 0.90None
Tubule9 02 of 4 0.80Down
Hindgut11 21 of 4 1.00None
Heart4 21 of 4 0.39Down
Fat body17 62 of 4 1.40None
Ovary5 11 of 4 0.40Down
Testis152 54 of 412.50Up
Male accessory glands29 34 of 4 2.40Up
Virgin spermatheca22 14 of 4 1.86Up
Mated spermatheca25 44 of 4 2.06Up
Adult carcass9 30 of 4 0.80None
Larval CNS20 64 of 4 1.71None
Larval Salivary gland4353 3604 of 4358.29Up
Larval midgut4 20 of 4 0.38None
Larval tubule6 10 of 4 0.50None
Larval hindgut9 10 of 4 0.77None
Larval fat body9 20 of 4 0.80None
Larval trachea9 23 of 4 0.78None
Larval carcass7 12 of 4 0.61None
S2 cells (growing)15 04 of 4 1.27None
Whole fly12 24 of 4



Tryptophanyl-tRNA synthetase (Aats-trp):

Annotation Number : CG9735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010803
Gbrowse : chr3R:5090722-5092670 (-) // 100.0 //
Probeset : 1638511_at
Accessions : protein= NP_524826; /// NP_731327;, nucleotide= NM_080087; /// NM_169264;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0010803.
BioGrid reports that CG9735 interacts with CG4528 Dmel CG18350 .
VDRC has 3 RNAi stocks for FBgn0010803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 24 of 4 0.40Down
Head129 54 of 4 0.50Down
Eye133 144 of 4 0.49Down
Thoracicoabdominal ganglion177 94 of 4 0.60Down
Salivary gland491 134 of 4 1.79Up
Crop168 34 of 4 0.60Down
Midgut283 84 of 4 1.00None
Tubule125 194 of 4 0.50Down
Hindgut118 54 of 4 0.40Down
Heart88 64 of 4 0.32Down
Fat body188 294 of 4 0.68Down
Ovary352 104 of 4 1.30Up
Testis386 114 of 4 1.40Up
Male accessory glands253 154 of 4 0.90None
Virgin spermatheca90 114 of 4 0.33Down
Mated spermatheca115 24 of 4 0.42Down
Adult carcass106 94 of 4 0.40Down
Larval CNS248 214 of 4 0.90None
Larval Salivary gland743 474 of 4 2.70Up
Larval midgut286 224 of 4 1.04None
Larval tubule123 94 of 4 0.40Down
Larval hindgut236 84 of 4 0.86Down
Larval fat body148 274 of 4 0.50Down
Larval trachea228 624 of 4 0.83None
Larval carcass339 504 of 4 1.23None
S2 cells (growing)436 204 of 4 1.59Up
Whole fly275 54 of 4



Tryptophanyl-tRNA synthetase (Aats-trp):

Annotation Number : CG9735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010803
Gbrowse : chr3R:5090722-5092670 (-) // 100.0 //
Probeset : 1635547_a_at
Accessions : protein= NP_524826; /// NP_731327;, nucleotide= NM_080087; /// NM_169264;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0010803.
BioGrid reports that CG9735 interacts with CG4528 Dmel CG18350 .
VDRC has 3 RNAi stocks for FBgn0010803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 24 of 4 0.60Down
Head67 44 of 4 0.40Down
Eye92 74 of 4 0.59Down
Thoracicoabdominal ganglion109 44 of 4 0.70Down
Salivary gland321 134 of 4 2.03Up
Crop87 24 of 4 0.60Down
Midgut141 114 of 4 0.90None
Tubule100 144 of 4 0.60Down
Hindgut81 34 of 4 0.50Down
Heart51 34 of 4 0.33Down
Fat body61 74 of 4 0.39Down
Ovary238 64 of 4 1.50Up
Testis286 114 of 4 1.80Up
Male accessory glands179 114 of 4 1.10None
Virgin spermatheca47 04 of 4 0.30Down
Mated spermatheca70 54 of 4 0.45Down
Adult carcass66 34 of 4 0.40Down
Larval CNS144 34 of 4 0.91None
Larval Salivary gland497 214 of 4 3.14Up
Larval midgut126 94 of 4 0.80Down
Larval tubule68 24 of 4 0.40Down
Larval hindgut116 64 of 4 0.74Down
Larval fat body107 164 of 4 0.70Down
Larval trachea114 154 of 4 0.72Down
Larval carcass129 144 of 4 0.82None
S2 cells (growing)296 54 of 4 1.87Up
Whole fly158 64 of 4

Looking for FBgn0010803. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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