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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010808 through 18771 annotations produced 1 hits



lethal (3) 03670 (l(3)03670):

Annotation Number : CG1715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010808
Gbrowse : chr3R:26878332-26879634 (-) // 100.0 //
Probeset : 1638726_at
Accessions : protein= NP_651838;, nucleotide= NM_143581;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0010808.
BDGP gene expression has embryonic in situ data for l(3)03670: 14 pix of staining in 18 body parts.
TRiP has 2 RNAi stocks for FBgn0010808 available for purchase.
VDRC has 4 RNAi stocks for FBgn0010808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain565 ± 134 of 4 1.30None
Head517 ± 64 of 4 1.20None
Eye816 ± 304 of 4 1.92Up
Thoracicoabdominal ganglion739 ± 264 of 4 1.70Up
Salivary gland647 ± 164 of 4 1.53Up
Crop416 ± 114 of 4 1.00None
Midgut432 ± 154 of 4 1.00None
Tubule595 ± 204 of 4 1.40Up
Hindgut841 ± 144 of 4 2.00Up
Heart802 ± 244 of 4 1.89Up
Fat body785 ± 794 of 4 1.85Up
Ovary319 ± 34 of 4 0.80None
Testis69 ± 34 of 4 0.20Down
Male accessory glands376 ± 94 of 4 0.90None
Virgin spermatheca750 ± 444 of 4 1.77Up
Mated spermatheca696 ± 224 of 4 1.64Up
Adult carcass935 ± 314 of 4 2.20Up
Larval CNS387 ± 314 of 4 0.91None
Larval Salivary gland447 ± 254 of 4 1.05None
Larval midgut652 ± 254 of 4 1.54Up
Larval tubule420 ± 284 of 4 1.00None
Larval hindgut1012 ± 414 of 4 2.38Up
Larval fat body252 ± 214 of 4 0.60Down
Larval trachea506 ± 324 of 4 1.19None
Larval carcass1004 ± 574 of 4 2.37Up
S2 cells (growing)365 ± 64 of 4 0.86None
Whole fly424 ± 364 of 4

Looking for FBgn0010808. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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