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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0010812 through 18771 annotations produced 1 hits

Translocase of outer membrane 34 (Tom34):

Annotation Number : CG2708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010812
Gbrowse : chr3R:3859026-3862381 (+) // 100.0 //
Probeset : 1640009_at
Accessions : protein= NP_524796;, nucleotide= NM_080057;
Pathway : 0005742 // mitochondrial outer membrane translocase complex // inferred from sequence or structural similarity
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0010812.
BDGP gene expression has embryonic in situ data for Tom34: 14 pix of staining in 4 body parts.
BioGrid reports that CG2708 interacts with CG5325 CG8614 .
VDRC has 3 RNAi stocks for FBgn0010812 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 24 of 4 1.00None
Head45 24 of 4 0.90None
Eye46 44 of 4 0.87None
Thoracicoabdominal ganglion54 24 of 4 1.00None
Salivary gland40 43 of 4 0.76None
Crop132 94 of 4 2.50Up
Midgut60 14 of 4 1.10None
Tubule77 44 of 4 1.40Up
Hindgut70 24 of 4 1.30Up
Heart51 14 of 4 0.95None
Fat body17 32 of 4 0.33Down
Ovary78 44 of 4 1.40Up
Testis46 24 of 4 0.90None
Male accessory glands43 24 of 4 0.80Down
Virgin spermatheca25 24 of 4 0.47Down
Mated spermatheca41 24 of 4 0.77Down
Adult carcass61 54 of 4 1.10None
Larval CNS61 54 of 4 1.15None
Larval Salivary gland230 94 of 4 4.28Up
Larval midgut64 24 of 4 1.20Up
Larval tubule78 44 of 4 1.50Up
Larval hindgut68 44 of 4 1.28None
Larval fat body41 24 of 4 0.80Down
Larval trachea89 114 of 4 1.66Up
Larval carcass129 144 of 4 2.40Up
S2 cells (growing)109 34 of 4 2.04Up
Whole fly53 34 of 4

Looking for FBgn0010812. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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