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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010830 through 18771 annotations produced 1 hits



lethal (3) 04053 (l(3)04053):

Annotation Number : CG11238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010830
Gbrowse : chr3L:22731695-22734484 (-) // 100.0 //
Probeset : 1628785_at
Accessions : protein= NP_649414;, nucleotide= NM_141157;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0010830.
BDGP gene expression has embryonic in situ data for l(3)04053: 15 pix of staining in 12 body parts.
VDRC has 2 RNAi stocks for FBgn0010830 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 ± 54 of 4 1.20Up
Head108 ± 84 of 4 0.70Down
Eye125 ± 34 of 4 0.85Down
Thoracicoabdominal ganglion160 ± 44 of 4 1.10None
Salivary gland136 ± 34 of 4 0.93None
Crop141 ± 44 of 4 1.00None
Midgut87 ± 64 of 4 0.60Down
Tubule94 ± 44 of 4 0.60Down
Hindgut114 ± 44 of 4 0.80Down
Heart91 ± 54 of 4 0.62Down
Fat body68 ± 34 of 4 0.47Down
Ovary342 ± 44 of 4 2.30Up
Testis40 ± 24 of 4 0.30Down
Male accessory glands129 ± 114 of 4 0.90None
Virgin spermatheca140 ± 44 of 4 0.96None
Mated spermatheca163 ± 84 of 4 1.12None
Adult carcass82 ± 54 of 4 0.60Down
Larval CNS164 ± 104 of 4 1.12Up
Larval Salivary gland130 ± 44 of 4 0.89Down
Larval midgut59 ± 24 of 4 0.41Down
Larval tubule78 ± 24 of 4 0.50Down
Larval hindgut91 ± 54 of 4 0.62Down
Larval fat body84 ± 94 of 4 0.60Down
Larval trachea140 ± 144 of 4 0.96None
Larval carcass104 ± 44 of 4 0.71Down
S2 cells (growing)96 ± 24 of 4 0.66Down
Whole fly146 ± 44 of 4

Looking for FBgn0010830. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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