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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010909 through 18771 annotations produced 1 hits



Mishappen (msn):

Annotation Number : CG16973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010909
Gbrowse : chr3L:2555773-2586540 (-) // 99.98 //
Probeset : 1632475_at
Accessions : protein= NP_524679; /// NP_995971; /// NP_995972; /// NP_995973; /// NP_995974;, nucleotide= NM_079940; /// NM_206249; /// NM_206250; /// NM_206251; /// NM_206252;
Pathway : thorax closure // inferred from mutant phenotype /// 0048477 // oogenesis // non-traceable author statement"
Interpro : 0005938 // cell cortex // inferred from direct assay
FlyMine data for FBgn0010909.
Homophila reports that CG16973 is a close match (9e-11) to human gene HHF5;INSR (NP_001073285), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
BioGrid reports that CG16973 interacts with CG32635 CG5680 CG5680 CG5680 CG18361 CG2275 CG2275 CG9375 CG14026 CG9704 CG4353 CG4353 CG2248 CG12530 CG3727 CG3727 CG3727 CG3727 CG3727 CG3727 CG2248 CG18492 CG1822 CG12919 CG12919 CG7892 .
TRiP has 3 RNAi stocks for FBgn0010909 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 34 of 4 0.90None
Head117 94 of 4 0.60Down
Eye65 44 of 4 0.36Down
Thoracicoabdominal ganglion125 94 of 4 0.70Down
Salivary gland95 54 of 4 0.52Down
Crop280 114 of 4 1.50Up
Midgut209 114 of 4 1.20None
Tubule44 54 of 4 0.20Down
Hindgut200 54 of 4 1.10None
Heart149 104 of 4 0.82None
Fat body111 64 of 4 0.61Down
Ovary480 64 of 4 2.60Up
Testis53 54 of 4 0.30Down
Male accessory glands105 94 of 4 0.60Down
Virgin spermatheca84 64 of 4 0.46Down
Mated spermatheca72 54 of 4 0.40Down
Adult carcass113 54 of 4 0.60Down
Larval CNS252 194 of 4 1.38Up
Larval Salivary gland59 64 of 4 0.32Down
Larval midgut235 104 of 4 1.29Up
Larval tubule177 84 of 4 1.00None
Larval hindgut194 44 of 4 1.07None
Larval fat body107 104 of 4 0.60Down
Larval trachea203 224 of 4 1.12None
Larval carcass147 204 of 4 0.81None
S2 cells (growing)854 174 of 4 4.69Up
Whole fly182 124 of 4

Looking for FBgn0010909. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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