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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011020 through 18771 annotations produced 1 hits



lethal (3) s2214 (Sas-4):

Annotation Number : CG10061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011020
Gbrowse : chr3R:2977075-2979886 (+) // 100.0 //
Probeset : 1627558_at
Accessions : protein= NP_649701;, nucleotide= NM_141444;
Pathway : 0005814 // centriole // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0011020.
Homophila reports that CG10061 is a close match (3e-37) to human gene CEMPJ;CPAP;MCPH6 (NP_060921), a gene associated with Microcephaly, primary autosomal recessive, 6, 608393 (3).
BioGrid reports that CG10061 interacts with CG10159 CG12559 CG3035 CG7583 CG8010 .
TRiP has 1 RNAi stocks for FBgn0011020 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.40Down
Head9 12 of 4 0.20Down
Eye10 04 of 4 0.18Down
Thoracicoabdominal ganglion25 14 of 4 0.40Down
Salivary gland15 61 of 4 0.27Down
Crop11 03 of 4 0.20Down
Midgut12 21 of 4 0.20Down
Tubule9 10 of 4 0.20Down
Hindgut11 04 of 4 0.20Down
Heart6 02 of 4 0.12Down
Fat body3 20 of 4 0.06Down
Ovary186 44 of 4 3.30Up
Testis24 14 of 4 0.40Down
Male accessory glands26 14 of 4 0.50Down
Virgin spermatheca12 03 of 4 0.22Down
Mated spermatheca14 14 of 4 0.26Down
Adult carcass11 32 of 4 0.20Down
Larval CNS93 74 of 4 1.64Up
Larval Salivary gland20 24 of 4 0.36Down
Larval midgut9 30 of 4 0.16Down
Larval tubule10 13 of 4 0.20Down
Larval hindgut13 14 of 4 0.23Down
Larval fat body11 22 of 4 0.20Down
Larval trachea29 24 of 4 0.53Down
Larval carcass13 14 of 4 0.24Down
S2 cells (growing)62 44 of 4 1.09None
Whole fly57 54 of 4

Looking for FBgn0011020. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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