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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011204 through 18771 annotations produced 1 hits



cueball (cue):

Annotation Number : CG12086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011204
Gbrowse : chr3L:1503220-1517238 (-) // 99.71 //
Probeset : 1633400_at
Accessions : protein= NP_612113;, nucleotide= NM_138269;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0011204.
Homophila reports that CG12086 is a close match (7e-11) to human gene NOTCH1;TAN1 (NP_060087), a gene associated with Aortic valve disease, 109730 (3);Leukemia, T-cell acute lymphoblastic (2).
TRiP has 1 RNAi stocks for FBgn0011204 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 54 of 4 0.50Down
Head192 ± 174 of 4 0.40Down
Eye217 ± 94 of 4 0.49Down
Thoracicoabdominal ganglion246 ± 84 of 4 0.60Down
Salivary gland309 ± 294 of 4 0.70Down
Crop178 ± 114 of 4 0.40Down
Midgut322 ± 94 of 4 0.70Down
Tubule187 ± 44 of 4 0.40Down
Hindgut434 ± 204 of 4 1.00None
Heart540 ± 94 of 4 1.22Up
Fat body1064 ± 1264 of 4 2.41Up
Ovary723 ± 124 of 4 1.60Up
Testis93 ± 54 of 4 0.20Down
Male accessory glands823 ± 324 of 4 1.90Up
Virgin spermatheca583 ± 594 of 4 1.32None
Mated spermatheca597 ± 754 of 4 1.35None
Adult carcass571 ± 344 of 4 1.30Up
Larval CNS249 ± 134 of 4 0.56Down
Larval Salivary gland254 ± 194 of 4 0.58Down
Larval midgut183 ± 124 of 4 0.42Down
Larval tubule126 ± 54 of 4 0.30Down
Larval hindgut375 ± 404 of 4 0.85None
Larval fat body104 ± 74 of 4 0.20Down
Larval trachea162 ± 84 of 4 0.37Down
Larval carcass301 ± 194 of 4 0.68Down
S2 cells (growing)356 ± 284 of 4 0.81None
Whole fly441 ± 34 of 4

Looking for FBgn0011204. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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