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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011205 through 18771 annotations produced 2 hits



/// fumble (CG33969 /// fbl):

Annotation Number : CG32429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053969
Gbrowse : chr3L:20382947-20384487 (-) // 100.0 //
Probeset : 1641593_at
Accessions : protein= NP_001034034; /// NP_001034035;, nucleotide= NM_001038945; /// NM_001038946;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005886 // p
Interpro : 0004594 // pantothenate kinase activity // inferred from sequence similarity /// 0004594 // pantothenate kinase activity
FlyMine data for FBgn0053969.
VDRC has 2 RNAi stocks for FBgn0053969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 24 of 4 8.60Up
Head13 ± 13 of 4 1.50None
Eye14 ± 14 of 4 1.64Up
Thoracicoabdominal ganglion78 ± 54 of 4 8.80Up
Salivary gland29 ± 42 of 4 3.29Up
Crop19 ± 14 of 4 2.20Up
Midgut20 ± 14 of 4 2.30Up
Tubule17 ± 03 of 4 2.00Up
Hindgut23 ± 24 of 4 2.60Up
Heart11 ± 23 of 4 1.26None
Fat body24 ± 34 of 4 2.75Up
Ovary6 ± 00 of 4 0.70None
Testis2 ± 00 of 4 0.20Down
Male accessory glands15 ± 21 of 4 1.80None
Virgin spermatheca66 ± 64 of 4 7.52Up
Mated spermatheca37 ± 14 of 4 4.21Up
Adult carcass13 ± 40 of 4 1.50None
Larval CNS26 ± 44 of 4 2.94Up
Larval Salivary gland27 ± 24 of 4 3.04Up
Larval midgut12 ± 10 of 4 1.37None
Larval tubule11 ± 01 of 4 1.30None
Larval hindgut9 ± 04 of 4 1.10None
Larval fat body12 ± 40 of 4 1.40None
Larval trachea21 ± 24 of 4 2.38Up
Larval carcass13 ± 32 of 4 1.47None
S2 cells (growing)74 ± 24 of 4 8.40Up
Whole fly8 ± 11 of 4



fumble (fbl):

Annotation Number : CG5725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011205
Gbrowse : chr3L:20377548-20384554 (+) // 100.0 //
Probeset : 1637990_s_at
Accessions : protein= NP_524870; /// NP_597678; /// NP_620550; /// NP_730526; /// NP_730527;, nucleotide= NM_080131; /// NM_133434; /// NM_138997; /// NM_168851; /// NM_168852;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005886 // p
Interpro : 0004594 // pantothenate kinase activity // not recorded /// 0004594 // pantothenate kinase activity // inferred from seq
FlyMine data for FBgn0011205.
Homophila reports that CG5725 is a close match (1e-88) to human gene HARP;NBIA1;PANK2;PKAN (NP_705904), a gene associated with HARP syndrome, 607236 (3);Neurodegeneration, pantothenate kinase-associated, 234200 (3).
TRiP has 1 RNAi stocks for FBgn0011205 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 ± 24 of 4 0.30Down
Head307 ± 74 of 4 0.80Down
Eye123 ± 94 of 4 0.32Down
Thoracicoabdominal ganglion125 ± 44 of 4 0.30Down
Salivary gland275 ± 14 of 4 0.71Down
Crop1200 ± 324 of 4 3.10Up
Midgut634 ± 54 of 4 1.60Up
Tubule376 ± 354 of 4 1.00None
Hindgut997 ± 274 of 4 2.60Up
Heart1258 ± 184 of 4 3.25Up
Fat body1609 ± 1844 of 4 4.15Up
Ovary232 ± 54 of 4 0.60Down
Testis164 ± 34 of 4 0.40Down
Male accessory glands134 ± 74 of 4 0.30Down
Virgin spermatheca643 ± 264 of 4 1.66Up
Mated spermatheca492 ± 274 of 4 1.27Up
Adult carcass1152 ± 484 of 4 3.00Up
Larval CNS113 ± 74 of 4 0.29Down
Larval Salivary gland206 ± 114 of 4 0.53Down
Larval midgut457 ± 164 of 4 1.18Up
Larval tubule312 ± 64 of 4 0.80Down
Larval hindgut178 ± 34 of 4 0.46Down
Larval fat body881 ± 794 of 4 2.30Up
Larval trachea244 ± 394 of 4 0.63Down
Larval carcass184 ± 134 of 4 0.48Down
S2 cells (growing)184 ± 34 of 4 0.48Down
Whole fly387 ± 164 of 4

Looking for FBgn0011205. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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