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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011207 through 18771 annotations produced 1 hits



pelota (pelo):

Annotation Number : CG3959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011207
Gbrowse : chr2L:9700795-9708861 (+) // 100.0 //
Probeset : 1631161_at
Accessions : protein= NP_476982;, nucleotide= NM_057634;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred fro
FlyMine data for FBgn0011207.
BioGrid reports that CG3959 interacts with CG5686 CG7386 .
VDRC has 3 RNAi stocks for FBgn0011207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 ± 64 of 4 0.90Down
Head110 ± 54 of 4 0.60Down
Eye57 ± 14 of 4 0.33Down
Thoracicoabdominal ganglion140 ± 24 of 4 0.80Down
Salivary gland118 ± 74 of 4 0.68Down
Crop168 ± 24 of 4 1.00None
Midgut113 ± 84 of 4 0.60Down
Tubule261 ± 84 of 4 1.50Up
Hindgut105 ± 44 of 4 0.60Down
Heart119 ± 34 of 4 0.68Down
Fat body210 ± 194 of 4 1.20Up
Ovary388 ± 184 of 4 2.20Up
Testis240 ± 34 of 4 1.40Up
Male accessory glands307 ± 124 of 4 1.70Up
Virgin spermatheca154 ± 144 of 4 0.88None
Mated spermatheca192 ± 144 of 4 1.10None
Adult carcass126 ± 84 of 4 0.70Down
Larval CNS246 ± 204 of 4 1.40Up
Larval Salivary gland206 ± 84 of 4 1.18Up
Larval midgut121 ± 84 of 4 0.69Down
Larval tubule123 ± 34 of 4 0.70Down
Larval hindgut195 ± 54 of 4 1.11Up
Larval fat body197 ± 154 of 4 1.10None
Larval trachea231 ± 184 of 4 1.32Up
Larval carcass173 ± 144 of 4 0.98None
S2 cells (growing)313 ± 154 of 4 1.79Up
Whole fly175 ± 44 of 4

Looking for FBgn0011207. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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