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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011211 through 18771 annotations produced 2 hits



chr2R:18686558-18689691 (+) // 100.0 // (mitochondrial ATP synthase alpha subunit):

Annotation Number : CG3612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636548_at
Accessions : protein= , nucleotide= NP_726243;
Pathway : "0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from el
Interpro : engulfment // inferred from mutant phenotype /// 0007286 // spermatid development // inferred from mutant phenotype ///
FlyMine data for full length.
Homophila reports that CG3612 is a close match (1e-22) to human gene ATP6B1;VPP3 (NP_001683), a gene associated with Renal tubular acidosis with deafness, 267300 (3).
BioGrid reports that CG3612 interacts with CG6569 CG4654 CG6376 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2769 614 of 4 0.90None
Head3463 634 of 4 1.10Up
Eye3443 424 of 4 1.11None
Thoracicoabdominal ganglion3719 724 of 4 1.20Up
Salivary gland9013 2334 of 4 2.90Up
Crop4047 1854 of 4 1.30Up
Midgut3516 604 of 4 1.10Up
Tubule5474 864 of 4 1.80Up
Hindgut4630 1224 of 4 1.50Up
Heart4228 1964 of 4 1.36Up
Fat body5347 6264 of 4 1.72Up
Ovary2346 424 of 4 0.80Down
Testis811 234 of 4 0.30Down
Male accessory glands3364 314 of 4 1.10None
Virgin spermatheca6418 1384 of 4 2.07Up
Mated spermatheca6445 1974 of 4 2.08Up
Adult carcass6129 3554 of 4 2.00Up
Larval CNS2259 1004 of 4 0.73Down
Larval Salivary gland3974 764 of 4 1.28Up
Larval midgut4692 1234 of 4 1.51Up
Larval tubule2775 2634 of 4 0.90None
Larval hindgut4737 494 of 4 1.53Up
Larval fat body2042 1694 of 4 0.70Down
Larval trachea2527 1234 of 4 0.81Down
Larval carcass4540 4124 of 4 1.46Up
S2 cells (growing)2259 474 of 4 0.73Down
Whole fly3102 1174 of 4



aquaporin /// mitochondrial ATP synthase alpha subunit (AQP /// blw):

Annotation Number : CG12251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033807
Gbrowse : chr2R:9099841-9101433 (-) // 99.59 //
Probeset : 1626560_at
Accessions : protein= NP_001163140; /// NP_523728; /// NP_726243;, nucleotide= NM_001169669; /// NM_079004; /// NM_166554;
Pathway : engulfment // inferred from mutant phenotype /// 0007286 // spermatid development // inferred from mutant phenotype ///
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0033807.
BDGP gene expression has embryonic in situ data for blw: 10 pix of staining in 12 body parts.
VDRC has 1 RNAi stocks for FBgn0033807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.00Down
Head206 44 of 4 0.70None
Eye29 34 of 4 0.11Down
Thoracicoabdominal ganglion41 64 of 4 0.10Down
Salivary gland18 40 of 4 0.07Down
Crop632 164 of 4 2.30Up
Midgut44 24 of 4 0.20Down
Tubule14 11 of 4 0.10Down
Hindgut233 64 of 4 0.80None
Heart338 194 of 4 1.23None
Fat body18 33 of 4 0.07Down
Ovary2 01 of 4 0.00Down
Testis141 74 of 4 0.50Down
Male accessory glands129 124 of 4 0.50Down
Virgin spermatheca26 14 of 4 0.10Down
Mated spermatheca41 44 of 4 0.15Down
Adult carcass1008 824 of 4 3.70Up
Larval CNS5 10 of 4 0.02Down
Larval Salivary gland3 00 of 4 0.01Down
Larval midgut9 11 of 4 0.03Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut73 54 of 4 0.27Down
Larval fat body34 144 of 4 0.10Down
Larval trachea16 103 of 4 0.06Down
Larval carcass338 204 of 4 1.23None
S2 cells (growing)6 01 of 4 0.02Down
Whole fly276 364 of 4

Looking for FBgn0011211. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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