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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011232 through 18771 annotations produced 1 hits



scattered (scat):

Annotation Number : CG3766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011232
Gbrowse : chr2L:9431406-9435341 (+) // 100.0 //
Probeset : 1627832_at
Accessions : protein= NP_524905;, nucleotide= NM_080166;
Pathway : endosome to Golgi // inferred from sequence or structural similarity /// 0042147 // retrograde transport
Interpro : endosome to Golgi // inferred from electronic annotation"
FlyMine data for FBgn0011232.
BDGP gene expression has embryonic in situ data for scat: 25 pix of staining in 18 body parts.
BioGrid reports that CG3766 interacts with CG8725 .
TRiP has 1 RNAi stocks for FBgn0011232 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 34 of 4 1.20Up
Head74 ± 54 of 4 0.60Down
Eye92 ± 24 of 4 0.77Down
Thoracicoabdominal ganglion182 ± 84 of 4 1.50Up
Salivary gland485 ± 264 of 4 4.02Up
Crop152 ± 54 of 4 1.30Up
Midgut110 ± 54 of 4 0.90None
Tubule324 ± 74 of 4 2.70Up
Hindgut124 ± 44 of 4 1.00None
Heart59 ± 24 of 4 0.50Down
Fat body60 ± 44 of 4 0.50Down
Ovary229 ± 34 of 4 1.90Up
Testis44 ± 24 of 4 0.40Down
Male accessory glands340 ± 94 of 4 2.80Up
Virgin spermatheca232 ± 124 of 4 1.92Up
Mated spermatheca285 ± 144 of 4 2.37Up
Adult carcass69 ± 24 of 4 0.60Down
Larval CNS129 ± 64 of 4 1.07None
Larval Salivary gland1141 ± 304 of 4 9.45Up
Larval midgut180 ± 44 of 4 1.50Up
Larval tubule329 ± 74 of 4 2.70Up
Larval hindgut189 ± 54 of 4 1.57Up
Larval fat body59 ± 24 of 4 0.50Down
Larval trachea148 ± 184 of 4 1.23None
Larval carcass125 ± 24 of 4 1.04None
S2 cells (growing)108 ± 24 of 4 0.90Down
Whole fly120 ± 34 of 4

Looking for FBgn0011232. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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