Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011239 through 18771 annotations produced 2 hits



male sterile(2)46AB (ms(2)35Ci):

Annotation Number : CG31733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011239
Gbrowse : chr2L:15292544-15293543 (+) // 100.0 //
Probeset : 1633306_at
Accessions : protein= NP_723912;, nucleotide= NM_165115;
FlyMine data for FBgn0011239.
VDRC has 2 RNAi stocks for FBgn0011239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye0 00 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 10 of 4 0.15Down
Crop2 10 of 4 0.10Down
Midgut4 20 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut5 10 of 4 0.30Down
Heart1 00 of 4 0.05Down
Fat body1 00 of 4 0.06Down
Ovary1 00 of 4 0.10Down
Testis347 224 of 418.20Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca4 20 of 4 0.23Down
Mated spermatheca5 20 of 4 0.30Down
Adult carcass3 00 of 4 0.20Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland0 00 of 4 0.05Down
Larval midgut1 00 of 4 0.10Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut0 00 of 4 0.05Down
Larval fat body21 132 of 4 1.10None
Larval trachea3 10 of 4 0.18Down
Larval carcass1 00 of 4 0.08Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly19 11 of 4



male sterile(2)46AB (ms(2)35Ci):

Annotation Number : CG31733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011239
Gbrowse : chr2L:15292544-15293543 (+) // 100.0 //
Probeset : 1640740_a_at
Accessions : protein= NP_723912;, nucleotide= NM_165115;
FlyMine data for FBgn0011239.
VDRC has 2 RNAi stocks for FBgn0011239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland8 20 of 4 0.31Down
Crop2 10 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut3 10 of 4 0.10Down
Heart2 00 of 4 0.09Down
Fat body4 30 of 4 0.14Down
Ovary0 00 of 4 0.00Down
Testis338 194 of 411.90Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca17 21 of 4 0.61Down
Mated spermatheca26 72 of 4 0.92None
Adult carcass4 20 of 4 0.20Down
Larval CNS3 10 of 4 0.14Down
Larval Salivary gland2 10 of 4 0.10Down
Larval midgut2 00 of 4 0.10Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.11Down
Larval fat body41 232 of 4 1.50None
Larval trachea2 20 of 4 0.10Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)0 00 of 4 0.02Down
Whole fly28 24 of 4

Looking for FBgn0011239. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime