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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011244 through 18771 annotations produced 2 hits


Heat shock protein 60 related (Hsp60B):

Annotation Number : CG2830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011244
Gbrowse : chr2L:728411-730566 (+) // 100.0 //
Probeset : 1631238_at
Accessions : protein= NP_524925;, nucleotide= NM_080186;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0011244.
BDGP gene expression has embryonic in situ data for Hsp60B: 4 pix of staining in 1 body parts.
Homophila reports that CG2830 is a close match (4e-164) to human gene HSP60;HSPD1;SPG13 (NP_955472), a gene associated with Leukodystrophy, hypomyelinating, autosomal recessive, 612233 (3);Spastic paraplegia-13, 605280 (3).
BioGrid reports that CG2830 interacts with CG5649 CG3107 CG32647 CG3781 CG3937 CG4168 CG4617 CG4836 CG5188 CG5363 CG5792 CG6459 CG6486 CG6703 CG6866 CG6910 CG6932 CG7010 CG7200 CG7583 CG8184 CG8351 CG8893 CG8924 CG9247 .
VDRC has 3 RNAi stocks for FBgn0011244 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.03Down
Crop4 ± 10 of 4 0.00Down
Midgut4 ± 00 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body8 ± 10 of 4 0.05Down
Ovary3 ± 00 of 4 0.00Down
Testis1902 ± 304 of 410.80Up
Male accessory glands9 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 00 of 4 0.05Down
Mated spermatheca6 ± 11 of 4 0.04Down
Adult carcass19 ± 31 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.03Down
Larval Salivary gland10 ± 20 of 4 0.06Down
Larval midgut9 ± 10 of 4 0.05Down
Larval tubule9 ± 20 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.02Down
Larval fat body222 ± 1214 of 4 1.30None
Larval trachea7 ± 81 of 4 0.04Down
Larval carcass9 ± 10 of 4 0.05Down
S2 cells (growing)6 ± 20 of 4 0.04Down
Whole fly175 ± 184 of 4


Heat shock protein 60 related /// sodium chloride cotransporter 69 (Hsp60B /// Ncc69):

Annotation Number : CG4357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036279
Gbrowse : chr3L:12361745-12384515 (-) // 100.0 //
Probeset : 1626461_at
Accessions : protein= NP_524925; /// NP_648572; /// NP_996066;, nucleotide= NM_080186; /// NM_140315; /// NM_206344;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0036279.
Homophila reports that CG4357 is a close match (2e-52) to human gene ACCPN;KCC3;KCC3A;KCC3B;SLC12A6 (NP_598408), a gene associated with Agenesis of the corpus callosum with peripheral neuropathy, 218000 (3).
TRiP has 1 RNAi stocks for FBgn0036279 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 64 of 4 2.30Up
Head197 ± 294 of 4 2.80Up
Eye734 ± 1404 of 410.46Up
Thoracicoabdominal ganglion461 ± 194 of 4 6.60Up
Salivary gland10 ± 20 of 4 0.15Down
Crop207 ± 74 of 4 3.00Up
Midgut61 ± 24 of 4 0.90None
Tubule7 ± 10 of 4 0.10Down
Hindgut29 ± 34 of 4 0.40Down
Heart40 ± 24 of 4 0.58Down
Fat body14 ± 50 of 4 0.21Down
Ovary78 ± 34 of 4 1.10None
Testis97 ± 54 of 4 1.40Up
Male accessory glands260 ± 164 of 4 3.70Up
Virgin spermatheca169 ± 134 of 4 2.41Up
Mated spermatheca136 ± 204 of 4 1.94Up
Adult carcass127 ± 54 of 4 1.80Up
Larval CNS102 ± 134 of 4 1.46Up
Larval Salivary gland174 ± 74 of 4 2.49Up
Larval midgut87 ± 144 of 4 1.24None
Larval tubule16 ± 32 of 4 0.20Down
Larval hindgut74 ± 94 of 4 1.06None
Larval fat body26 ± 62 of 4 0.40Down
Larval trachea137 ± 264 of 4 1.95Up
Larval carcass163 ± 144 of 4 2.32Up
S2 cells (growing)23 ± 14 of 4 0.33Down
Whole fly70 ± 74 of 4

Looking for FBgn0011244. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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