FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011259 through 18771 annotations produced 1 hits

semiphorin (Sema-1a):

Annotation Number : CG18405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011259
Gbrowse : chr2L:8563795-8667429 (+) // 100.0 //
Probeset : 1634588_at
Accessions : protein= NP_001036348; /// NP_609243; /// NP_723407;, nucleotide= NM_001042883; /// NM_135399; /// NM_164830;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0011259.
Homophila reports that CG18405 is a close match (8e-12) to human gene CORD10;RP35;SEMA4A;SEMB (NP_071762), a gene associated with Cone-rod dystrophy 10, 610283 (3);Retinitis pigmentosa 35, 610282 (3).
BioGrid reports that CG18405 interacts with CG3665 CG3665 CG8967 CG8967 CG7503 .
TRiP has 2 RNAi stocks for FBgn0011259 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011259 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	191 ± 19	4 of 4	12.30	Up
Head	25 ± 3	4 of 4	1.60	None
Eye	10 ± 2	2 of 4	0.69	None
Thoracicoabdominal ganglion	136 ± 32	4 of 4	8.80	Up
Salivary gland	5 ± 2	0 of 4	0.38	Down
Crop	7 ± 0	2 of 4	0.50	Down
Midgut	5 ± 0	0 of 4	0.40	Down
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	7 ± 0	2 of 4	0.50	Down
Heart	11 ± 2	3 of 4	0.76	None
Fat body	8 ± 1	3 of 4	0.52	Down
Ovary	38 ± 1	4 of 4	2.50	Up
Testis	6 ± 0	4 of 4	0.40	Down
Male accessory glands	18 ± 3	3 of 4	1.20	None
Virgin spermatheca	5 ± 0	0 of 4	0.36	Down
Mated spermatheca	9 ± 2	1 of 4	0.63	None
Adult carcass	6 ± 2	0 of 4	0.40	Down
Larval CNS	56 ± 7	4 of 4	3.67	Up
Larval Salivary gland	4 ± 1	0 of 4	0.31	Down
Larval midgut	3 ± 0	1 of 4	0.20	Down
Larval tubule	5 ± 0	1 of 4	0.40	Down
Larval hindgut	5 ± 0	1 of 4	0.35	Down
Larval fat body	3 ± 1	0 of 4	0.20	Down
Larval trachea	8 ± 3	3 of 4	0.57	Down
Larval carcass	5 ± 1	0 of 4	0.37	Down
S2 cells (growing)	6 ± 0	4 of 4	0.41	Down
Whole fly	15 ± 1	4 of 4

Looking for FBgn0011259. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720