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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011259 through 18771 annotations produced 1 hits



semiphorin (Sema-1a):

Annotation Number : CG18405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011259
Gbrowse : chr2L:8563795-8667429 (+) // 100.0 //
Probeset : 1634588_at
Accessions : protein= NP_001036348; /// NP_609243; /// NP_723407;, nucleotide= NM_001042883; /// NM_135399; /// NM_164830;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0011259.
Homophila reports that CG18405 is a close match (8e-12) to human gene CORD10;RP35;SEMA4A;SEMB (NP_071762), a gene associated with Cone-rod dystrophy 10, 610283 (3);Retinitis pigmentosa 35, 610282 (3).
BioGrid reports that CG18405 interacts with CG3665 CG3665 CG8967 CG8967 CG7503 .
TRiP has 2 RNAi stocks for FBgn0011259 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 194 of 412.30Up
Head25 34 of 4 1.60None
Eye10 22 of 4 0.69None
Thoracicoabdominal ganglion136 324 of 4 8.80Up
Salivary gland5 20 of 4 0.38Down
Crop7 02 of 4 0.50Down
Midgut5 00 of 4 0.40Down
Tubule3 00 of 4 0.20Down
Hindgut7 02 of 4 0.50Down
Heart11 23 of 4 0.76None
Fat body8 13 of 4 0.52Down
Ovary38 14 of 4 2.50Up
Testis6 04 of 4 0.40Down
Male accessory glands18 33 of 4 1.20None
Virgin spermatheca5 00 of 4 0.36Down
Mated spermatheca9 21 of 4 0.63None
Adult carcass6 20 of 4 0.40Down
Larval CNS56 74 of 4 3.67Up
Larval Salivary gland4 10 of 4 0.31Down
Larval midgut3 01 of 4 0.20Down
Larval tubule5 01 of 4 0.40Down
Larval hindgut5 01 of 4 0.35Down
Larval fat body3 10 of 4 0.20Down
Larval trachea8 33 of 4 0.57Down
Larval carcass5 10 of 4 0.37Down
S2 cells (growing)6 04 of 4 0.41Down
Whole fly15 14 of 4

Looking for FBgn0011259. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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