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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011276 through 18771 annotations produced 1 hits



Helix loop helix protein 3B (HLH3B):

Annotation Number : CG2655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011276
Gbrowse : chrX:2574306-2575756 (-) // 100.0 //
Probeset : 1638386_at
Accessions : protein= NP_525055;, nucleotide= NM_080316;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0011276.
BioGrid reports that CG2655 interacts with CG5562 CG5102 CG3018 CG4496 CG1106 CG6549 CG1957 .
TRiP has 2 RNAi stocks for FBgn0011276 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 13 of 4 2.70Up
Head10 20 of 4 1.60None
Eye4 20 of 4 0.73None
Thoracicoabdominal ganglion24 32 of 4 4.00Up
Salivary gland13 60 of 4 2.13None
Crop6 10 of 4 1.00None
Midgut4 10 of 4 0.70None
Tubule4 10 of 4 0.70None
Hindgut2 00 of 4 0.40None
Heart3 10 of 4 0.49None
Fat body6 30 of 4 1.04None
Ovary0 00 of 4 0.10Down
Testis3 00 of 4 0.50None
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca9 30 of 4 1.56None
Mated spermatheca8 20 of 4 1.42None
Adult carcass8 20 of 4 1.40None
Larval CNS30 44 of 4 4.93Up
Larval Salivary gland4 10 of 4 0.76None
Larval midgut15 20 of 4 2.54Up
Larval tubule3 00 of 4 0.50None
Larval hindgut2 00 of 4 0.34None
Larval fat body13 30 of 4 2.10None
Larval trachea4 20 of 4 0.67None
Larval carcass2 00 of 4 0.38None
S2 cells (growing)2 10 of 4 0.42None
Whole fly6 10 of 4

Looking for FBgn0011276. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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