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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011277 through 18771 annotations produced 1 hits

Helix loop helix protein 4C (HLH4C):

Annotation Number : CG3052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011277
Gbrowse : chrX:4539159-4541447 (-) // 100.0 //
Probeset : 1628371_at
Accessions : protein= NP_476989;, nucleotide= NM_057641;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0011277.
BioGrid reports that CG3052 interacts with CG31036 CG31090 CG31170 CG32031 CG32086 CG32100 CG32171 CG33484 CG32428 CG32772 CG3338 CG3735 CG4005 CG4568 CG4865 CG4896 CG4998 CG5050 CG5057 CG5242 CG5709 CG5717 CG5783 CG5907 CG6163 CG6315 CG6353 CG6416 CG6972 CG7231 CG7264 CG7347 CG7856 CG8120 CG8145 CG8245 CG8292 CG8361 CG8414 CG8697 CG8745 CG8965 CG9015 CG9160 CG9173 CG9331 CG9556 CG9784 CG9875 CG32581 CG8974 CG31094 Dmel CG17162 .
TRiP has 1 RNAi stocks for FBgn0011277 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011277 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 3.80Up
Head7 11 of 4 1.20None
Eye4 00 of 4 0.76None
Thoracicoabdominal ganglion59 24 of 410.20Up
Salivary gland7 20 of 4 1.19None
Crop5 10 of 4 0.90None
Midgut7 01 of 4 1.20None
Tubule6 00 of 4 1.20None
Hindgut4 10 of 4 0.80None
Heart3 10 of 4 0.68None
Fat body17 44 of 4 3.00Up
Ovary2 00 of 4 0.40None
Testis2 11 of 4 0.40None
Male accessory glands5 10 of 4 1.00None
Virgin spermatheca8 00 of 4 1.50None
Mated spermatheca8 11 of 4 1.45None
Adult carcass5 20 of 4 0.90None
Larval CNS73 94 of 412.60Up
Larval Salivary gland5 20 of 4 1.00None
Larval midgut6 11 of 4 1.15None
Larval tubule5 10 of 4 1.00None
Larval hindgut4 12 of 4 0.75None
Larval fat body3 10 of 4 0.60None
Larval trachea4 12 of 4 0.70None
Larval carcass3 10 of 4 0.68None
S2 cells (growing)2 00 of 4 0.37None
Whole fly5 10 of 4

Looking for FBgn0011277. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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