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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011278 through 18771 annotations produced 1 hits



ladybird (lbe):

Annotation Number : CG6545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011278
Gbrowse : chr3R:17267313-17272042 (-) // 100.0 //
Probeset : 1634056_at
Accessions : protein= NP_524435;, nucleotide= NM_079711;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // non-traceable
FlyMine data for FBgn0011278.
TRiP has 1 RNAi stocks for FBgn0011278 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 1.00None
Head5 ± 10 of 4 1.70None
Eye2 ± 00 of 4 0.73None
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland19 ± 61 of 4 6.43None
Crop5 ± 20 of 4 1.80None
Midgut8 ± 20 of 4 2.90None
Tubule4 ± 10 of 4 1.70None
Hindgut2 ± 00 of 4 0.90None
Heart1 ± 00 of 4 0.60None
Fat body3 ± 20 of 4 1.28None
Ovary0 ± 00 of 4 0.20None
Testis10 ± 10 of 4 3.40Up
Male accessory glands5 ± 20 of 4 1.80None
Virgin spermatheca4 ± 10 of 4 1.64None
Mated spermatheca5 ± 10 of 4 1.70None
Adult carcass7 ± 20 of 4 2.50None
Larval CNS3 ± 10 of 4 1.05None
Larval Salivary gland19 ± 20 of 4 6.70Up
Larval midgut2 ± 00 of 4 0.68None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut7 ± 10 of 4 2.41None
Larval fat body11 ± 00 of 4 3.90Up
Larval trachea4 ± 40 of 4 1.64None
Larval carcass4 ± 20 of 4 1.48None
S2 cells (growing)2 ± 10 of 4 0.91None
Whole fly3 ± 10 of 4

Looking for FBgn0011278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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