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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011280 through 18771 annotations produced 1 hits



Pheromone-binding protein-related protein 2 (Pbprp2):

Annotation Number : CG1668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011280
Gbrowse : chrX:20290639-20292009 (+) // 100.0 //
Probeset : 1633703_s_at
Accessions : protein= NP_523421; /// NP_788940;, nucleotide= NM_078697; /// NM_176767;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0011280.
BDGP gene expression has embryonic in situ data for Pbprp2: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0011280 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 34 of 4 0.10Down
Head6619 2154 of 4 5.30Up
Eye3193 4754 of 4 2.54Up
Thoracicoabdominal ganglion45 74 of 4 0.00Down
Salivary gland37 102 of 4 0.03Down
Crop10 20 of 4 0.00Down
Midgut20 13 of 4 0.00Down
Tubule8 01 of 4 0.00Down
Hindgut17 24 of 4 0.00Down
Heart12 22 of 4 0.01Down
Fat body12 42 of 4 0.01Down
Ovary7 11 of 4 0.00Down
Testis9 01 of 4 0.00Down
Male accessory glands19 13 of 4 0.00Down
Virgin spermatheca9 00 of 4 0.01Down
Mated spermatheca11 22 of 4 0.01Down
Adult carcass1439 834 of 4 1.10None
Larval CNS10 24 of 4 0.01Down
Larval Salivary gland10 21 of 4 0.01Down
Larval midgut25 53 of 4 0.02Down
Larval tubule7 11 of 4 0.00Down
Larval hindgut8 21 of 4 0.01Down
Larval fat body22 51 of 4 0.00Down
Larval trachea64 1112 of 4 0.05Down
Larval carcass12 00 of 4 0.01Down
S2 cells (growing)10 12 of 4 0.01Down
Whole fly1259 674 of 4

Looking for FBgn0011280. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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