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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011282 through 18771 annotations produced 1 hits



Pheromone-binding protein-related protein 4 (Pbprp4):

Annotation Number : CG1176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011282
Gbrowse : chr3R:3076530-3077277 (-) // 100.0 //
Probeset : 1630963_at
Accessions : protein= NP_001097700; /// NP_476990;, nucleotide= NM_001104230; /// NM_057642;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0011282.
VDRC has 1 RNAi stocks for FBgn0011282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head453 414 of 412.90Up
Eye58 253 of 4 1.66None
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland5 00 of 4 0.16Down
Crop5 10 of 4 0.20Down
Midgut4 10 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart1 00 of 4 0.04Down
Fat body7 10 of 4 0.23Down
Ovary5 00 of 4 0.20Down
Testis1 00 of 4 0.00Down
Male accessory glands6 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.10Down
Mated spermatheca3 10 of 4 0.11Down
Adult carcass2 00 of 4 0.10Down
Larval CNS4 10 of 4 0.14Down
Larval Salivary gland6 21 of 4 0.19Down
Larval midgut5 20 of 4 0.15Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut5 10 of 4 0.17Down
Larval fat body9 40 of 4 0.30Down
Larval trachea7 10 of 4 0.21Down
Larval carcass5 10 of 4 0.15Down
S2 cells (growing)5 00 of 4 0.15Down
Whole fly35 34 of 4

Looking for FBgn0011282. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime