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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011290 through 18771 annotations produced 1 hits



chr3R:7504098-7505408 (-) // 100.0 // (TBP-associated factor 30kD subunit alpha):

Annotation Number : CG17358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625702_s_at
Accessions : protein= , nucleotide= NP_524320; /// NP_731616; /// NP_731617;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG17358 interacts with CG5654 CG5662 CG3497 CG4276 CG5010 CG6194 CG6569 CG7518 CG8004 CG8229 CG8303 CG8506 CG8972 CG9331 CG9520 CG9640 CG9770 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain550 114 of 4 3.20Up
Head206 114 of 4 1.20None
Eye333 204 of 4 1.96Up
Thoracicoabdominal ganglion382 74 of 4 2.20Up
Salivary gland197 54 of 4 1.16None
Crop189 34 of 4 1.10None
Midgut93 44 of 4 0.50Down
Tubule108 24 of 4 0.60Down
Hindgut149 34 of 4 0.90None
Heart133 74 of 4 0.78Down
Fat body77 44 of 4 0.46Down
Ovary340 54 of 4 2.00Up
Testis46 34 of 4 0.30Down
Male accessory glands270 44 of 4 1.60Up
Virgin spermatheca62 34 of 4 0.37Down
Mated spermatheca69 44 of 4 0.41Down
Adult carcass121 44 of 4 0.70Down
Larval CNS375 194 of 4 2.21Up
Larval Salivary gland175 84 of 4 1.03None
Larval midgut75 24 of 4 0.44Down
Larval tubule143 24 of 4 0.80None
Larval hindgut91 14 of 4 0.54Down
Larval fat body100 64 of 4 0.60Down
Larval trachea211 214 of 4 1.24Up
Larval carcass145 34 of 4 0.86None
S2 cells (growing)275 24 of 4 1.62Up
Whole fly170 94 of 4

Looking for FBgn0011290. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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