FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011291 through 18771 annotations produced 1 hits

chr2L:9762360-9763244 (-) // 100.0 // (Gdi-related /// TBP-associated factor 30kD subunit beta):

Annotation Number : CG4079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636486_at
Accessions : protein= , nucleotide= NP_523524; /// NP_723484;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG4079 interacts with CG4185 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 3	4 of 4	0.80	Down
Head	70 ± 3	4 of 4	0.50	Down
Eye	102 ± 9	4 of 4	0.73	Down
Thoracicoabdominal ganglion	107 ± 2	4 of 4	0.80	Down
Salivary gland	127 ± 6	4 of 4	0.91	None
Crop	94 ± 2	4 of 4	0.70	Down
Midgut	79 ± 5	4 of 4	0.60	Down
Tubule	60 ± 1	4 of 4	0.40	Down
Hindgut	81 ± 5	4 of 4	0.60	Down
Heart	82 ± 5	4 of 4	0.59	Down
Fat body	68 ± 9	4 of 4	0.49	Down
Ovary	209 ± 2	4 of 4	1.50	Up
Testis	66 ± 6	4 of 4	0.50	Down
Male accessory glands	157 ± 7	4 of 4	1.10	None
Virgin spermatheca	74 ± 2	4 of 4	0.53	Down
Mated spermatheca	87 ± 2	4 of 4	0.62	Down
Adult carcass	64 ± 7	4 of 4	0.50	Down
Larval CNS	188 ± 8	4 of 4	1.34	Up
Larval Salivary gland	186 ± 5	4 of 4	1.32	Up
Larval midgut	68 ± 8	4 of 4	0.48	Down
Larval tubule	109 ± 4	4 of 4	0.80	Down
Larval hindgut	83 ± 2	4 of 4	0.59	Down
Larval fat body	85 ± 8	4 of 4	0.60	Down
Larval trachea	148 ± 13	4 of 4	1.05	None
Larval carcass	99 ± 1	4 of 4	0.71	Down
S2 cells (growing)	142 ± 5	4 of 4	1.01	None
Whole fly	141 ± 2	4 of 4

Looking for FBgn0011291. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720