FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011296 through 18771 annotations produced 3 hits

lethal (2) essential for life (l(2)efl):

Annotation Number : CG4533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011296
Gbrowse : chr2R:19572320-19573044 (-) // 100.0 //
Probeset : 1626416_a_at
Accessions : protein= NP_523827; /// NP_726354;, nucleotide= NM_079103; /// NM_166620;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0011296.
BDGP gene expression has embryonic in situ data for l(2)efl: 21 pix of staining in 2 body parts.
Homophila reports that CG4533 is a close match (3e-14) to human gene CMT2F;HMN2B;HSP27;HSPB1 (NP_001531), a gene associated with Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3);Neuropathy, distal hereditary motor, type IIB, 608634 (3).
BioGrid reports that CG4533 interacts with CG4533 CG5660 CG8219 .
TRiP has 1 RNAi stocks for FBgn0011296 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011296 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 3	4 of 4	0.10	Down
Head	445 ± 56	4 of 4	1.00	None
Eye	39 ± 5	4 of 4	0.09	Down
Thoracicoabdominal ganglion	34 ± 4	4 of 4	0.10	Down
Salivary gland	11 ± 3	0 of 4	0.03	Down
Crop	5056 ± 277	4 of 4	11.70	Up
Midgut	824 ± 34	4 of 4	1.90	Up
Tubule	96 ± 30	4 of 4	0.20	Down
Hindgut	2861 ± 56	4 of 4	6.60	Up
Heart	1473 ± 108	4 of 4	3.42	Up
Fat body	54 ± 10	4 of 4	0.13	Down
Ovary	26 ± 1	4 of 4	0.10	Down
Testis	117 ± 7	4 of 4	0.30	Down
Male accessory glands	588 ± 33	4 of 4	1.40	Up
Virgin spermatheca	31 ± 2	4 of 4	0.07	Down
Mated spermatheca	59 ± 13	4 of 4	0.14	Down
Adult carcass	1119 ± 114	4 of 4	2.60	Up
Larval CNS	18 ± 1	4 of 4	0.04	Down
Larval Salivary gland	22 ± 4	3 of 4	0.05	Down
Larval midgut	1285 ± 63	4 of 4	2.99	Up
Larval tubule	97 ± 15	4 of 4	0.20	Down
Larval hindgut	3196 ± 99	4 of 4	7.43	Up
Larval fat body	14 ± 3	2 of 4	0.00	Down
Larval trachea	219 ± 144	4 of 4	0.51	None
Larval carcass	4097 ± 271	4 of 4	9.52	Up
S2 cells (growing)	10 ± 0	1 of 4	0.02	Down
Whole fly	430 ± 28	4 of 4

lethal (2) essential for life (l(2)efl):

Annotation Number : CG4533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011296
Gbrowse : chr2R:19572173-19573063 (-) // 100.0 //
Probeset : 1627242_at
Accessions : protein= NP_523827; /// NP_726354;, nucleotide= NM_079103; /// NM_166620;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0011296.
BDGP gene expression has embryonic in situ data for l(2)efl: 21 pix of staining in 2 body parts.
Homophila reports that CG4533 is a close match (3e-14) to human gene CMT2F;HMN2B;HSP27;HSPB1 (NP_001531), a gene associated with Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3);Neuropathy, distal hereditary motor, type IIB, 608634 (3).
BioGrid reports that CG4533 interacts with CG4533 CG5660 CG8219 .
TRiP has 1 RNAi stocks for FBgn0011296 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011296 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	130 ± 8	4 of 4	0.10	Down
Head	1609 ± 192	4 of 4	1.10	None
Eye	214 ± 27	4 of 4	0.15	Down
Thoracicoabdominal ganglion	131 ± 11	4 of 4	0.10	Down
Salivary gland	80 ± 16	1 of 4	0.06	Down
Crop	6360 ± 407	4 of 4	4.40	Up
Midgut	2510 ± 95	4 of 4	1.80	Up
Tubule	678 ± 221	4 of 4	0.50	Down
Hindgut	4565 ± 97	4 of 4	3.20	Up
Heart	4540 ± 196	4 of 4	3.18	Up
Fat body	319 ± 122	4 of 4	0.22	Down
Ovary	82 ± 8	4 of 4	0.10	Down
Testis	331 ± 22	4 of 4	0.20	Down
Male accessory glands	2555 ± 86	4 of 4	1.80	Up
Virgin spermatheca	377 ± 30	4 of 4	0.26	Down
Mated spermatheca	734 ± 185	4 of 4	0.51	Down
Adult carcass	3294 ± 375	4 of 4	2.30	Up
Larval CNS	71 ± 10	4 of 4	0.05	Down
Larval Salivary gland	90 ± 11	4 of 4	0.06	Down
Larval midgut	3987 ± 103	4 of 4	2.79	Up
Larval tubule	398 ± 42	4 of 4	0.30	Down
Larval hindgut	4432 ± 112	4 of 4	3.10	Up
Larval fat body	48 ± 15	1 of 4	0.00	Down
Larval trachea	839 ± 515	4 of 4	0.59	None
Larval carcass	4949 ± 431	4 of 4	3.46	Up
S2 cells (growing)	14 ± 5	0 of 4	0.01	Down
Whole fly	1429 ± 61	4 of 4

lethal (2) essential for life (l(2)efl):

Annotation Number : CG4533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011296
Gbrowse : chr2R:19572320-19573044 (-) // 100.0 //
Probeset : 1635952_at
Accessions : protein= NP_523827; /// NP_726354;, nucleotide= NM_079103; /// NM_166620;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0011296.
BDGP gene expression has embryonic in situ data for l(2)efl: 21 pix of staining in 2 body parts.
Homophila reports that CG4533 is a close match (3e-14) to human gene CMT2F;HMN2B;HSP27;HSPB1 (NP_001531), a gene associated with Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3);Neuropathy, distal hereditary motor, type IIB, 608634 (3).
BioGrid reports that CG4533 interacts with CG4533 CG5660 CG8219 .
TRiP has 1 RNAi stocks for FBgn0011296 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011296 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.60	None
Head	4 ± 0	0 of 4	1.60	None
Eye	3 ± 0	0 of 4	1.16	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.60	None
Salivary gland	12 ± 1	0 of 4	3.91	Up
Crop	102 ± 10	4 of 4	32.90	Up
Midgut	15 ± 1	1 of 4	4.80	Up
Tubule	8 ± 3	0 of 4	2.80	None
Hindgut	43 ± 4	4 of 4	14.00	Up
Heart	31 ± 11	4 of 4	10.05	None
Fat body	7 ± 3	1 of 4	2.27	None
Ovary	0 ± 0	0 of 4	0.10	None
Testis	4 ± 0	2 of 4	1.50	None
Male accessory glands	13 ± 5	1 of 4	4.50	None
Virgin spermatheca	1 ± 0	0 of 4	0.40	None
Mated spermatheca	3 ± 1	0 of 4	1.12	None
Adult carcass	20 ± 6	1 of 4	6.70	None
Larval CNS	3 ± 1	0 of 4	0.97	None
Larval Salivary gland	1 ± 1	0 of 4	0.60	None
Larval midgut	14 ± 2	0 of 4	4.65	Up
Larval tubule	2 ± 0	0 of 4	0.60	None
Larval hindgut	31 ± 3	4 of 4	10.05	Up
Larval fat body	6 ± 2	0 of 4	2.10	None
Larval trachea	2 ± 2	0 of 4	0.92	None
Larval carcass	102 ± 13	4 of 4	33.06	Up
S2 cells (growing)	0 ± 0	0 of 4	0.23	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0011296. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720