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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011300 through 18771 annotations produced 1 hits



Activin A receptor 45A (babo):

Annotation Number : CG8224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011300
Gbrowse : chr2R:4839847-4849141 (+) // 100.0 //
Probeset : 1623424_a_at
Accessions : protein= NP_001163092; /// NP_476999; /// NP_477000;, nucleotide= NM_001169621; /// NM_057651; /// NM_057652;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trac
FlyMine data for FBgn0011300.
Homophila reports that CG8224 is a close match (3e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
BioGrid reports that CG8224 interacts with CG1765 CG2411 CG7552 CG7904 .
TRiP has 4 RNAi stocks for FBgn0011300 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 14 of 4 1.30None
Head56 104 of 4 0.70None
Eye79 64 of 4 0.93None
Thoracicoabdominal ganglion65 84 of 4 0.80None
Salivary gland69 104 of 4 0.81None
Crop54 34 of 4 0.60Down
Midgut117 54 of 4 1.40Up
Tubule50 04 of 4 0.60Down
Hindgut77 24 of 4 0.90None
Heart68 44 of 4 0.80None
Fat body117 124 of 4 1.38Up
Ovary264 104 of 4 3.10Up
Testis24 24 of 4 0.30Down
Male accessory glands55 44 of 4 0.60Down
Virgin spermatheca27 14 of 4 0.32Down
Mated spermatheca32 24 of 4 0.37Down
Adult carcass51 64 of 4 0.60Down
Larval CNS146 204 of 4 1.72Up
Larval Salivary gland131 44 of 4 1.54Up
Larval midgut99 54 of 4 1.17None
Larval tubule122 34 of 4 1.40Up
Larval hindgut92 44 of 4 1.08None
Larval fat body110 54 of 4 1.30Up
Larval trachea108 54 of 4 1.27Up
Larval carcass79 74 of 4 0.93None
S2 cells (growing)187 34 of 4 2.20Up
Whole fly85 64 of 4

Looking for FBgn0011300. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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