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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011327 through 18771 annotations produced 2 hits



ubiquitin C-terminal hydrolase (Uch-L3):

Annotation Number : CG3431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011327
Gbrowse : chr3L:9468824-9470073 (-) // 99.49 //
Probeset : 1635466_at
Accessions : protein= NP_524003;, nucleotide= NM_079279;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005622 // intracellular // inferred from elect
Interpro : 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // non-traceable a
FlyMine data for FBgn0011327.
TRiP has 1 RNAi stocks for FBgn0011327 available for purchase.
VDRC has 4 RNAi stocks for FBgn0011327 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 34 of 4 0.30Down
Head47 34 of 4 0.20Down
Eye49 34 of 4 0.22Down
Thoracicoabdominal ganglion48 04 of 4 0.20Down
Salivary gland61 84 of 4 0.27Down
Crop81 54 of 4 0.40Down
Midgut55 34 of 4 0.20Down
Tubule65 64 of 4 0.30Down
Hindgut69 14 of 4 0.30Down
Heart123 114 of 4 0.55Down
Fat body102 154 of 4 0.46Down
Ovary394 104 of 4 1.80Up
Testis808 204 of 4 3.60Up
Male accessory glands70 34 of 4 0.30Down
Virgin spermatheca31 44 of 4 0.14Down
Mated spermatheca41 14 of 4 0.18Down
Adult carcass70 44 of 4 0.30Down
Larval CNS380 274 of 4 1.69Up
Larval Salivary gland180 204 of 4 0.80None
Larval midgut78 54 of 4 0.35Down
Larval tubule145 24 of 4 0.60Down
Larval hindgut170 34 of 4 0.76Down
Larval fat body163 294 of 4 0.70None
Larval trachea269 304 of 4 1.20None
Larval carcass315 344 of 4 1.40None
S2 cells (growing)359 124 of 4 1.60Up
Whole fly225 104 of 4



/// ubiquitin C-terminal hydrolase (CG31639 /// Uch-L3):

Annotation Number : CG31639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051639
Gbrowse : chr2L:6153839-6155088 (-) // 100.0 //
Probeset : 1634244_s_at
Accessions : protein= NP_723162; /// NP_723163;, nucleotide= NM_164686; /// NM_164687;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005622 // intracellular // inferred from elect
Interpro : 0004175 // endopeptidase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // infer
FlyMine data for FBgn0051639.
BDGP gene expression has embryonic in situ data for Uch-L3: 14 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0051639 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head4 31 of 4 0.00Down
Eye6 22 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland10 20 of 4 0.01Down
Crop2 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule5 10 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart7 11 of 4 0.01Down
Fat body4 10 of 4 0.00Down
Ovary4 12 of 4 0.00Down
Testis3176 1784 of 4 3.70Up
Male accessory glands11 21 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.00Down
Mated spermatheca6 21 of 4 0.01Down
Adult carcass15 51 of 4 0.00Down
Larval CNS2 11 of 4 0.00Down
Larval Salivary gland11 11 of 4 0.01Down
Larval midgut11 22 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut5 11 of 4 0.01Down
Larval fat body546 2914 of 4 0.60None
Larval trachea37 533 of 4 0.04Down
Larval carcass10 22 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly861 324 of 4

Looking for FBgn0011327. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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