FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011335 through 18771 annotations produced 1 hits

lethal (3) j2D3 (l(3)j2D3):

Annotation Number : CG6801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011335
Gbrowse : chr3L:12109235-12111156 (+) // 100.0 //
Probeset : 1623985_at
Accessions : protein= NP_648545;, nucleotide= NM_140288;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0011335.
BioGrid reports that CG6801 interacts with CG6801 CG7357 CG7014 CG8361 CG9014 CG9573 .
VDRC has 3 RNAi stocks for FBgn0011335 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	114 ± 1	4 of 4	1.20	None
Head	68 ± 5	4 of 4	0.70	Down
Eye	80 ± 1	4 of 4	0.86	None
Thoracicoabdominal ganglion	90 ± 3	4 of 4	1.00	None
Salivary gland	41 ± 4	4 of 4	0.44	Down
Crop	72 ± 1	4 of 4	0.80	None
Midgut	39 ± 1	4 of 4	0.40	Down
Tubule	80 ± 4	4 of 4	0.90	Down
Hindgut	60 ± 3	4 of 4	0.60	Down
Heart	51 ± 3	4 of 4	0.55	Down
Fat body	56 ± 4	4 of 4	0.60	Down
Ovary	261 ± 6	4 of 4	2.80	Up
Testis	53 ± 3	4 of 4	0.60	Down
Male accessory glands	44 ± 4	4 of 4	0.50	Down
Virgin spermatheca	74 ± 4	4 of 4	0.80	None
Mated spermatheca	83 ± 4	4 of 4	0.89	None
Adult carcass	43 ± 0	4 of 4	0.50	Down
Larval CNS	144 ± 18	4 of 4	1.54	Up
Larval Salivary gland	83 ± 4	4 of 4	0.89	None
Larval midgut	42 ± 1	4 of 4	0.46	Down
Larval tubule	50 ± 5	4 of 4	0.50	Down
Larval hindgut	75 ± 3	4 of 4	0.81	None
Larval fat body	37 ± 2	4 of 4	0.40	Down
Larval trachea	109 ± 8	4 of 4	1.17	None
Larval carcass	49 ± 1	4 of 4	0.53	Down
S2 cells (growing)	65 ± 2	4 of 4	0.70	Down
Whole fly	93 ± 8	4 of 4

Looking for FBgn0011335. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720