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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011336 through 18771 annotations produced 1 hits



Oligosaccharyl transferase 3 (OstStt3):

Annotation Number : CG7748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011336
Gbrowse : chr3R:20892433-20895372 (-) // 100.0 //
Probeset : 1631240_at
Accessions : protein= NP_524494;, nucleotide= NM_079770;
Pathway : 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0016020 // membrane
Interpro : "0004576 // oligosaccharyl transferase activity // inferred from sequence or structural similarity /// 0004576 // oligos
FlyMine data for FBgn0011336.
BDGP gene expression has embryonic in situ data for OstStt3: 14 pix of staining in 21 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 ± 14 of 4 0.60Down
Head420 ± 314 of 4 1.00None
Eye331 ± 134 of 4 0.82Down
Thoracicoabdominal ganglion279 ± 104 of 4 0.70Down
Salivary gland3377 ± 554 of 4 8.38Up
Crop390 ± 54 of 4 1.00None
Midgut711 ± 84 of 4 1.80Up
Tubule883 ± 564 of 4 2.20Up
Hindgut448 ± 84 of 4 1.10Up
Heart495 ± 304 of 4 1.23Up
Fat body708 ± 704 of 4 1.76Up
Ovary362 ± 154 of 4 0.90None
Testis363 ± 64 of 4 0.90Down
Male accessory glands4516 ± 1224 of 411.20Up
Virgin spermatheca1961 ± 524 of 4 4.87Up
Mated spermatheca1983 ± 704 of 4 4.92Up
Adult carcass389 ± 134 of 4 1.00None
Larval CNS653 ± 394 of 4 1.62Up
Larval Salivary gland3337 ± 914 of 4 8.28Up
Larval midgut641 ± 414 of 4 1.59Up
Larval tubule548 ± 294 of 4 1.40Up
Larval hindgut666 ± 44 of 4 1.65Up
Larval fat body759 ± 874 of 4 1.90Up
Larval trachea844 ± 904 of 4 2.10Up
Larval carcass743 ± 654 of 4 1.84Up
S2 cells (growing)1632 ± 484 of 4 4.05Up
Whole fly402 ± 94 of 4

Looking for FBgn0011336. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime