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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011361 through 18771 annotations produced 3 hits



NADH-ubiquinone oxidoreductase acyl-carrier subunit (mtacp1):

Annotation Number : CG9160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011361
Gbrowse : chr3L:1329805-1331633 (+) // 100.0 //
Probeset : 1634955_at
Accessions : protein= NP_477002; /// NP_477003;, nucleotide= NM_057654; /// NM_057655;
Pathway : NADH to ubiquinone // not recorded /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotatio
Interpro : 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070469
FlyMine data for FBgn0011361.
BDGP gene expression has embryonic in situ data for mtacp1: 10 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0011361 available for purchase.
VDRC has 5 RNAi stocks for FBgn0011361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain490 84 of 4 0.80None
Head669 434 of 4 1.10None
Eye778 224 of 4 1.32Up
Thoracicoabdominal ganglion555 234 of 4 0.90None
Salivary gland1333 254 of 4 2.26Up
Crop563 304 of 4 1.00None
Midgut785 154 of 4 1.30Up
Tubule496 304 of 4 0.80Down
Hindgut1278 224 of 4 2.20Up
Heart1203 344 of 4 2.04Up
Fat body1215 1324 of 4 2.06Up
Ovary387 24 of 4 0.70Down
Testis147 94 of 4 0.20Down
Male accessory glands433 104 of 4 0.70Down
Virgin spermatheca722 514 of 4 1.22None
Mated spermatheca677 354 of 4 1.15None
Adult carcass1211 304 of 4 2.00Up
Larval CNS487 744 of 4 0.82None
Larval Salivary gland509 84 of 4 0.86None
Larval midgut512 254 of 4 0.87None
Larval tubule454 494 of 4 0.80None
Larval hindgut935 484 of 4 1.58Up
Larval fat body302 314 of 4 0.50Down
Larval trachea539 354 of 4 0.91None
Larval carcass942 584 of 4 1.59Up
S2 cells (growing)617 184 of 4 1.04None
Whole fly591 414 of 4



NADH-ubiquinone oxidoreductase acyl-carrier subunit (mtacp1):

Annotation Number : CG9160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011361
Gbrowse : chr3L:1329805-1331633 (+) // 100.0 //
Probeset : 1624715_at
Accessions : protein= NP_477002; /// NP_477003;, nucleotide= NM_057654; /// NM_057655;
Pathway : NADH to ubiquinone // not recorded /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotatio
Interpro : 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070469
FlyMine data for FBgn0011361.
BDGP gene expression has embryonic in situ data for mtacp1: 10 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0011361 available for purchase.
VDRC has 5 RNAi stocks for FBgn0011361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain720 114 of 4 0.90None
Head820 544 of 4 1.00None
Eye1084 334 of 4 1.34Up
Thoracicoabdominal ganglion907 384 of 4 1.10None
Salivary gland1095 554 of 4 1.35Up
Crop532 274 of 4 0.70Down
Midgut825 274 of 4 1.00None
Tubule1063 184 of 4 1.30Up
Hindgut782 494 of 4 1.00None
Heart976 424 of 4 1.21Up
Fat body1128 404 of 4 1.39Up
Ovary675 84 of 4 0.80None
Testis451 104 of 4 0.60Down
Male accessory glands248 74 of 4 0.30Down
Virgin spermatheca728 564 of 4 0.90None
Mated spermatheca623 194 of 4 0.77Down
Adult carcass1269 784 of 4 1.60Up
Larval CNS590 664 of 4 0.73Down
Larval Salivary gland836 394 of 4 1.03None
Larval midgut614 304 of 4 0.76Down
Larval tubule503 384 of 4 0.60Down
Larval hindgut732 254 of 4 0.90None
Larval fat body276 94 of 4 0.30Down
Larval trachea543 404 of 4 0.67Down
Larval carcass817 774 of 4 1.01None
S2 cells (growing)714 174 of 4 0.88None
Whole fly809 494 of 4



NADH-ubiquinone oxidoreductase acyl-carrier subunit (mtacp1):

Annotation Number : CG9160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011361
Gbrowse : chr3L:1329805-1331633 (+) // 100.0 //
Probeset : 1624776_a_at
Accessions : protein= NP_477002; /// NP_477003;, nucleotide= NM_057654; /// NM_057655;
Pathway : NADH to ubiquinone // not recorded /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotatio
Interpro : 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070469
FlyMine data for FBgn0011361.
BDGP gene expression has embryonic in situ data for mtacp1: 10 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0011361 available for purchase.
VDRC has 5 RNAi stocks for FBgn0011361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain862 114 of 4 0.90None
Head929 414 of 4 1.00None
Eye1072 464 of 4 1.16Up
Thoracicoabdominal ganglion1099 384 of 4 1.20Up
Salivary gland1514 74 of 4 1.64Up
Crop818 434 of 4 0.90None
Midgut1012 174 of 4 1.10Up
Tubule1194 304 of 4 1.30Up
Hindgut1488 374 of 4 1.60Up
Heart1217 394 of 4 1.32Up
Fat body1529 1214 of 4 1.65Up
Ovary736 74 of 4 0.80Down
Testis382 14 of 4 0.40Down
Male accessory glands506 104 of 4 0.50Down
Virgin spermatheca1516 464 of 4 1.64Up
Mated spermatheca1253 314 of 4 1.35Up
Adult carcass1639 574 of 4 1.80Up
Larval CNS767 444 of 4 0.83Down
Larval Salivary gland655 174 of 4 0.71Down
Larval midgut778 274 of 4 0.84Down
Larval tubule641 534 of 4 0.70Down
Larval hindgut1316 414 of 4 1.42Up
Larval fat body422 194 of 4 0.50Down
Larval trachea582 384 of 4 0.63Down
Larval carcass1079 1044 of 4 1.17None
S2 cells (growing)778 84 of 4 0.84Down
Whole fly925 294 of 4

Looking for FBgn0011361. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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