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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011455 through 18771 annotations produced 1 hits



lethal (3) neo18 (l(3)neo18):

Annotation Number : CG9762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011455
Gbrowse : chr3L:12130592-12131684 (-) // 100.0 //
Probeset : 1633698_at
Accessions : protein= NP_652042;, nucleotide= NM_143785;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespan //
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0011455.
BDGP gene expression has embryonic in situ data for l(3)neo18: 10 pix of staining in 15 body parts.
VDRC has 2 RNAi stocks for FBgn0011455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1295 ± 224 of 4 1.00None
Head1687 ± 224 of 4 1.20Up
Eye1613 ± 584 of 4 1.18Up
Thoracicoabdominal ganglion1442 ± 374 of 4 1.10None
Salivary gland2699 ± 534 of 4 1.98Up
Crop1431 ± 524 of 4 1.10None
Midgut1550 ± 394 of 4 1.10Up
Tubule1417 ± 394 of 4 1.00None
Hindgut2210 ± 104 of 4 1.60Up
Heart1886 ± 1024 of 4 1.39Up
Fat body2718 ± 1864 of 4 2.00Up
Ovary851 ± 724 of 4 0.60Down
Testis606 ± 444 of 4 0.40Down
Male accessory glands1155 ± 574 of 4 0.80Down
Virgin spermatheca2017 ± 824 of 4 1.48Up
Mated spermatheca1838 ± 494 of 4 1.35Up
Adult carcass2623 ± 774 of 4 1.90Up
Larval CNS776 ± 644 of 4 0.57Down
Larval Salivary gland1377 ± 474 of 4 1.01None
Larval midgut1581 ± 574 of 4 1.16Up
Larval tubule927 ± 734 of 4 0.70Down
Larval hindgut1663 ± 744 of 4 1.22Up
Larval fat body430 ± 284 of 4 0.30Down
Larval trachea837 ± 614 of 4 0.62Down
Larval carcass2080 ± 1294 of 4 1.53Up
S2 cells (growing)567 ± 54 of 4 0.42Down
Whole fly1361 ± 574 of 4

Looking for FBgn0011455. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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