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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011474 through 18771 annotations produced 1 hits



pr-set7 (pr-set7):

Annotation Number : CG3307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011474
Gbrowse : chr3R:10141709-10145597 (+) // 100.0 //
Probeset : 1624463_s_at
Accessions : protein= NP_650354; /// NP_731900; /// NP_731901;, nucleotide= NM_142097; /// NM_169577; /// NM_169578;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005700 // polytene chromosome // inferred from direct ass
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0011474.
TRiP has 1 RNAi stocks for FBgn0011474 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 34 of 4 1.00None
Head32 ± 14 of 4 0.40Down
Eye30 ± 24 of 4 0.38Down
Thoracicoabdominal ganglion71 ± 34 of 4 0.90None
Salivary gland47 ± 24 of 4 0.60None
Crop24 ± 14 of 4 0.30Down
Midgut22 ± 24 of 4 0.30Down
Tubule12 ± 13 of 4 0.20Down
Hindgut33 ± 24 of 4 0.40Down
Heart20 ± 14 of 4 0.25Down
Fat body37 ± 44 of 4 0.47Down
Ovary236 ± 94 of 4 3.00Up
Testis19 ± 24 of 4 0.20Down
Male accessory glands34 ± 24 of 4 0.40Down
Virgin spermatheca8 ± 03 of 4 0.11Down
Mated spermatheca6 ± 32 of 4 0.07Down
Adult carcass42 ± 74 of 4 0.50None
Larval CNS130 ± 114 of 4 1.63Up
Larval Salivary gland79 ± 44 of 4 1.00None
Larval midgut40 ± 34 of 4 0.50Down
Larval tubule23 ± 34 of 4 0.30Down
Larval hindgut51 ± 34 of 4 0.65None
Larval fat body24 ± 44 of 4 0.30Down
Larval trachea45 ± 44 of 4 0.56None
Larval carcass35 ± 34 of 4 0.45Down
S2 cells (growing)114 ± 24 of 4 1.43None
Whole fly80 ± 134 of 4

Looking for FBgn0011474. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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